Rroxscaffold_1G00071420

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Reverse (-)
92246186 .. 92248956
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071420.1

Sequence Viewer

Length: 357 bp
ATGCCTCCAGAGTATGCAATGCATGGACAATTCTCGGTGAAGTTTGATGTGTACAGTCTTGGTGTCTTAATCTTAGAGATTGTAATTGGCAAGAAGAACAATAGCTTCTATCAATCAGACCACAGTGAAGACCTCTTGACCTATGTTGTCTCTGAGCTCCATTTGAGTGGTGCATGGAATCCTTATCCTGAGCTCTGTCTTGTTGAGCATGCTTTGGTTTTGATTGTTTTTTACAATTCAACAGCTGACTGGTTTGGTGATTCATCTTCCACTATGTCCACTGTCCAGAAGTTTCTGCATCAGGCCGATGGCGTCAGTTACTGCCGTCTGATATTATTCTACAAAGACTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.53

Weight (kDa)

4.92

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 1 cut(s) 240
AluBI AGCT 4 cut(s) 105, 157, 193, 245
AluI AGCT 4 cut(s) 105, 157, 193, 245
Alw21I GWGCWC 2 cut(s) 159, 195
Alw26I GTCTC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 49, 269
BanII GRGCYC 2 cut(s) 159, 195
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 159, 195
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 154
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 144, 180
BseNI ACTGG 1 cut(s) 254
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 2 cut(s) 159, 195
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 159, 195
Bsp1407I TGTACA 1 cut(s) 51
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 145, 181
BsrDI GCAATG 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 254
BssNI GRCGYC 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 56, 125, 283
BstACI GRCGYC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 73, 153, 189
BstMAI GTCTC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 130, 279
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 321
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 23, 174, 209
CviJI RGCY 5 cut(s) 105, 157, 193, 245, 305
CviKI_1 RGCY 5 cut(s) 105, 157, 193, 245, 305
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 3 cut(s) 73, 153, 189
Ecl136II GAGCTC 2 cut(s) 157, 193
Eco24I GRGCYC 2 cut(s) 159, 195
Eco53kI GAGCTC 2 cut(s) 157, 193
EcoICRI GAGCTC 2 cut(s) 157, 193
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 159, 195
FaeI CATG 3 cut(s) 26, 177, 212
FaiI YATR 6 cut(s) 15, 24, 144, 175, 210, 275
FatI CATG 3 cut(s) 22, 173, 208
FriOI GRGCYC 2 cut(s) 159, 195
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 3 cut(s) 26, 177, 212
HinfI GANTC 2 cut(s) 178, 260
HphI GGTGA 2 cut(s) 49, 269
Hpy166II GTNNAC 2 cut(s) 52, 279
Hpy188I TCNGA 3 cut(s) 118, 154, 330
Hpy188III TCNNGA 4 cut(s) 8, 136, 188, 286
Hpy8I GTNNAC 2 cut(s) 52, 279
HpyCH4III ACNGT 3 cut(s) 56, 125, 283
HpyCH4V TGCA 4 cut(s) 17, 22, 173, 298
HpyF3I CTNAG 3 cut(s) 73, 153, 189
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 3 cut(s) 26, 177, 212
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 21, 201, 235, 287, 299
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 317
MboII GAAGA 3 cut(s) 106, 140, 258
MhlI GDGCHC 2 cut(s) 159, 195
MluCI AATT 3 cut(s) 29, 84, 235
MnlI CCTC 2 cut(s) 15, 143
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 245
NlaIII CATG 3 cut(s) 26, 177, 212
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 178, 260
Psp124BI GAGCTC 2 cut(s) 159, 195
PstNI CAGNNNCTG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 165
SacI GAGCTC 2 cut(s) 159, 195
SaqAI TTAA 1 cut(s) 68
SduI GDGCHC 2 cut(s) 159, 195
SetI ASST 6 cut(s) 107, 135, 143, 159, 195, 247
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 165
SphI GCATGC 1 cut(s) 212
Sse9I AATT 3 cut(s) 29, 84, 235
SstI GAGCTC 2 cut(s) 159, 195
TaaI ACNGT 3 cut(s) 56, 125, 283
TasI AATT 3 cut(s) 29, 84, 235
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 2 cut(s) 178, 260
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 130, 286
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 2 cut(s) 130, 286
XceI RCATGY 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.