Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

94388778 .. 94398760

Gene Structure 9983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAACGTACTTGGAAAGGTATATGAAGCAAAGCATGAACTTGAAAAGGACAATTGCCAAACAAGGGAATTGGCTTTTAGGAATTATGAATTGGCTTTCACCATGGGTACTTATAGGTTCTTTGATGACAACCATAGAATAAAATCACCTATCACTGCTACTCCTTATACTGTTGCCACTCTCCAAACAGCAACAAATAGCTTTAGTCAAGAATTTCTTGTTGGTGAAGGTTCCCTTGGTCGTGTTTACCGAGCTGAGTTCCCCAATGGAAAGCCGGAACCTGAATTTCGGCCTCCCATGTCTGAAGTTGTGCAAGCGCTGGTCCGCTTAGTGCATGCAAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

6.83

Isoelectric Point (pI)

21.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	212, 284
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	9, 109
AfeI	AGCGCT	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	6 cut(s)	74, 106, 204, 219, 236, 251
AluBI	AGCT	3 cut(s)	201, 254, 345
AluI	AGCT	3 cut(s)	201, 254, 345
Aor51HI	AGCGCT	1 cut(s)	318
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	212, 284
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	91, 138, 236
AvaII	GGWCC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	232, 279
BsaJI	CCNNGG	2 cut(s)	102, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	102, 235
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	232, 279
BssECI	CCNNGG	2 cut(s)	102, 235
BssT1I	CCWWGG	2 cut(s)	102, 235
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	315, 336
BstDEI	CTNAG	2 cut(s)	255, 328
BstDSI	CCRYGG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	315, 336
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	8, 108
CviAII	CATG	4 cut(s)	35, 103, 298, 335
CviJI	RGCY	7 cut(s)	74, 95, 201, 254, 274, 292, 345
CviKI_1	RGCY	7 cut(s)	74, 95, 201, 254, 274, 292, 345
CviQI	GTAC	2 cut(s)	8, 108
DdeI	CTNAG	2 cut(s)	255, 328
Eco130I	CCWWGG	2 cut(s)	102, 235
Eco47I	GGWCC	1 cut(s)	322
Eco47III	AGCGCT	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	102, 235
ErhI	CCWWGG	2 cut(s)	102, 235
FaeI	CATG	4 cut(s)	38, 106, 301, 338
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 219, 251
FatI	CATG	4 cut(s)	34, 102, 297, 334
FspBI	CTAG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	38, 106, 301, 338
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	3 cut(s)	91, 138, 236
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	313, 334, 338
HpyF3I	CTNAG	2 cut(s)	255, 328
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	38, 106, 301, 338
HspAI	GCGC	1 cut(s)	317
LpnPI	CCDG	3 cut(s)	288, 294, 305
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	6
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	6 cut(s)	52, 68, 82, 89, 212, 284
MnlI	CCTC	1 cut(s)	303
MspI	CCGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	4 cut(s)	38, 106, 301, 338
NlaIV	GGNNCC	2 cut(s)	232, 279
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	232, 279
PspPI	GGNCC	1 cut(s)	322
RsaI	GTAC	2 cut(s)	9, 109
RsaNI	GTAC	2 cut(s)	8, 108
Sau96I	GGNCC	1 cut(s)	322
SetI	ASST	9 cut(s)	9, 21, 119, 151, 203, 232, 256, 283, 347
SinI	GGWCC	1 cut(s)	322
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	6 cut(s)	52, 68, 82, 89, 212, 284
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	102, 235
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	9
TasI	AATT	6 cut(s)	52, 68, 82, 89, 212, 284
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	17, 39, 51, 102
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	2 cut(s)	212, 284
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.