Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

95662801 .. 95675293

Gene Structure 12493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCAACTATCTGGATGGCGGGGAAGAGATTTATATTCGAATGGCAAGAACAGAACTAGAAAAGAGTATTGACTTGGAGAAACGTTCTGACATTTTTATGGGAATTGCGCGAGGACAAGTATATCTTCATGAAGACTCCAGGCTGAGAATTATCCATAGAGATCTCAAAGCAAGCAACATTTTACTAGACAGTGAAATGATGTCCAAGATTTCCGACTTTGGAACAGGAAGAATTTTCGGGGGAGAACAGACAGAAGAAACTACCAGTAGAGTGACTGGACACATGACGAACTCGGTTTATCCCGGGGCTCTACCATCCAGGTTTGAGCATTCACTTGGTACCTATTGGCTTGCTGGACGACGTACCGAGCTATTGCTCGATGACGGAACACGAATGCGTGATCGTCGGAATAGTACAGTTCTTTGTCATTCTACATTAACTAGGGTAGTCATGATATGTTGCAAGACGTCACTCAAGACTTGTGAAGTCCCCGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

167

Amino Acids

19.04

Weight (kDa)

6.22

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 88	1e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 83	1.1e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	112
AciI	CCGC	1 cut(s)	21
AclI	AACGTT	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	3 cut(s)	343, 367, 418
AjnI	CCWGG	2 cut(s)	140, 320
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Ama87I	CYCGRG	2 cut(s)	305, 494
ApoI	RAATTY	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuII	TTCGAA	1 cut(s)	40
AvaI	CYCGRG	2 cut(s)	305, 494
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	141
BccI	CCATC	2 cut(s)	11, 325
BciT130I	CCWGG	2 cut(s)	142, 322
BcnI	CCSGG	2 cut(s)	306, 307
BfaI	CTAG	3 cut(s)	59, 188, 444
BglII	AGATCT	1 cut(s)	163
Bme1390I	CCNGG	4 cut(s)	142, 306, 307, 322
BmeT110I	CYCGRG	2 cut(s)	305, 494
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	4 cut(s)	142, 306, 307, 322
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	306, 307
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	305, 306, 495
Bse1I	ACTGG	2 cut(s)	267, 283
BseBI	CCWGG	2 cut(s)	142, 322
BseDI	CCNNGG	3 cut(s)	305, 306, 495
BseGI	GGATG	2 cut(s)	22, 317
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	267, 283
Bsh1236I	CGCG	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	341
BsiHKCI	CYCGRG	2 cut(s)	305, 494
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	2 cut(s)	331, 402
BsoBI	CYCGRG	2 cut(s)	305, 494
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	163, 403
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	2 cut(s)	130, 453
BspLI	GGNNCC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	267, 283
BssECI	CCNNGG	3 cut(s)	305, 306, 495
BssMI	GATC	2 cut(s)	163, 403
BssNI	GRCGYC	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	142, 322
Bst4CI	ACNGT	2 cut(s)	194, 421
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	175, 354
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	22, 317
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	166, 406
BstMBI	GATC	2 cut(s)	163, 403
BstNI	CCWGG	2 cut(s)	142, 322
BstSCI	CCNGG	4 cut(s)	140, 304, 305, 320
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	22, 317
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	175, 354
CciI	TCATGA	2 cut(s)	130, 453
CfoI	GCGC	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	342, 366, 417
CviAII	CATG	3 cut(s)	131, 286, 454
CviJI	RGCY	4 cut(s)	145, 311, 352, 373
CviKI_1	RGCY	4 cut(s)	145, 311, 352, 373
CviQI	GTAC	3 cut(s)	342, 366, 417
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	165, 405
DpnII	GATC	2 cut(s)	163, 403
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	305, 494
EcoRII	CCWGG	2 cut(s)	140, 320
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	3 cut(s)	134, 289, 457
FaiI	YATR	8 cut(s)	36, 101, 124, 132, 159, 287, 455, 460
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	130, 285, 453
FauI	CCCGC	1 cut(s)	14
FokI	GGATG	2 cut(s)	29, 304
FriOI	GRGCYC	1 cut(s)	313
FspBI	CTAG	3 cut(s)	59, 188, 444
GlaI	GCGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	124
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	3 cut(s)	134, 289, 457
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	3 cut(s)	91, 217, 411
Hpy188III	TCNNGA	4 cut(s)	14, 131, 454, 478
Hpy99I	CGWCG	2 cut(s)	366, 411
HpyCH4III	ACNGT	2 cut(s)	194, 421
HpyCH4IV	ACGT	3 cut(s)	85, 364, 470
HpyCH4V	TGCA	1 cut(s)	465
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	3 cut(s)	85, 364, 470
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	134, 289, 457
HspAI	GCGC	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	163, 403
LpnPI	CCDG	9 cut(s)	127, 154, 213, 264, 280, 307, 319, 334, 342
MaeI	CTAG	3 cut(s)	59, 188, 444
MaeII	ACGT	3 cut(s)	85, 364, 470
MaeIII	GTNAC	2 cut(s)	274, 471
MalI	GATC	2 cut(s)	165, 405
MboI	GATC	2 cut(s)	163, 403
MboII	GAAGA	5 cut(s)	38, 119, 146, 243, 269
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	105, 150, 234
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	240, 389
MnlI	CCTC	2 cut(s)	107, 490
MseI	TTAA	2 cut(s)	440, 502
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	4 cut(s)	142, 306, 307, 322
Mva1269I	GAATGC	2 cut(s)	331, 402
MvaI	CCWGG	2 cut(s)	142, 322
MvnI	CGCG	1 cut(s)	112
NciI	CCSGG	2 cut(s)	306, 307
NdeII	GATC	2 cut(s)	163, 403
NlaIII	CATG	3 cut(s)	134, 289, 457
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	274, 471
NspV	TTCGAA	1 cut(s)	40
PagI	TCATGA	2 cut(s)	130, 453
PctI	GAATGC	2 cut(s)	331, 402
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	140, 320
PspGI	CCWGG	2 cut(s)	140, 320
PspN4I	GGNNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	343, 367, 418
RsaNI	GTAC	3 cut(s)	342, 366, 417
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	440, 502
Sau3AI	GATC	2 cut(s)	163, 403
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	142, 306, 307, 322
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	6 cut(s)	88, 326, 347, 367, 375, 473
SfuI	TTCGAA	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	105, 150, 234
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	3 cut(s)	59, 188, 444
StyD4I	CCNGG	4 cut(s)	140, 304, 305, 320
TaaI	ACNGT	2 cut(s)	194, 421
TaiI	ACGT	3 cut(s)	88, 367, 473
TaqI	TCGA	2 cut(s)	40, 381
TasI	AATT	3 cut(s)	105, 150, 234
TatI	WGTACW	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	440, 502
Tru9I	TTAA	2 cut(s)	440, 502
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	274, 471
Tsp45I	GTSAC	2 cut(s)	274, 471
TspDTI	ATGAA	2 cut(s)	119, 147
TspGWI	ACGGA	1 cut(s)	402
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	234
XmaI	CCCGGG	1 cut(s)	305
XspI	CTAG	3 cut(s)	59, 188, 444
ZraI	GACGTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.