Rroxscaffold_2G00083880
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Reverse (-)
6444933 .. 6447838
2906 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00083880.1

Sequence Viewer

Length: 480 bp
ATGACCATGAGCCACCTCAACCCAATAAACGTGCAAAAGATGGTGGTGGTCAGAATGGACATATGGATTCTCAGACAGCTTGAAAATGGTTTACAAAGAAGGGATGGAGATTCAAACAGGTCTTCTGAAGCTGTGCCTGAGAGGGGTATGAGCATACTCAAGCTGCTCCTGTGCAGTTACCAAGTGACAGTGAAGACTTGGGTGATGGGGAAACCAGAGAAGAGAAACCTAAAATCATTGTGCAAACAAGGAGTGAGGATTGATCTTCTTGATGATGGTTACAGAGTGGAGAAAGTATGGGCAGAAAGTAGTCAAAGGAATCCTCATCAGGGCTCTACACAGCGATCTCACGAGAGAGTTGGCTGCAACCCATTCATTTCCAGCGTTCGTGTGTTCCATAATGGCGGGGTGACCTCCTTCCTTTATCGGACCGTACCATTTCCCGATCAAAAAGCATTACTTACTGGTTTGATTAAGTAG

Protein Analysis

159

Amino Acids

18.18

Weight (kDa)

9.96

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 143, 329
AgsI TTSAA 2 cut(s) 83, 114
AluBI AGCT 3 cut(s) 79, 131, 163
AluI AGCT 3 cut(s) 79, 131, 163
ApeKI GCWGC 2 cut(s) 163, 363
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 214, 421
AvaII GGWCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 335
BauI CACGAG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 114, 200
BbvI GCAGC 2 cut(s) 150, 350
BccI CCATC 4 cut(s) 34, 98, 199, 269
BisI GCNGC 2 cut(s) 164, 364
BlsI GCNGC 2 cut(s) 165, 365
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 114, 200
BpuEI CTTGAG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 329
Bse1I ACTGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 143, 329
BseMII CTCAG 2 cut(s) 85, 129
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 2 cut(s) 150, 350
BsgI GTGCAG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 143, 329
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 262, 344, 445
BspACI CCGC 1 cut(s) 405
BspCNI CTCAG 2 cut(s) 84, 130
BsrI ACTGG 1 cut(s) 469
BssMI GATC 3 cut(s) 262, 344, 445
BssSI CACGAG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 190, 433
Bst6I CTCTTC 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 71, 138
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 265, 347, 448
BstMBI GATC 3 cut(s) 262, 344, 445
BstPI GGTNACC 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 150, 350
BstV2I GAAGAC 2 cut(s) 114, 200
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 429
CpoI CGGWCCG 1 cut(s) 429
Csp6I GTAC 1 cut(s) 434
CspI CGGWCCG 1 cut(s) 429
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 12, 79, 131, 163, 333, 363
CviKI_1 RGCY 6 cut(s) 12, 79, 131, 163, 333, 363
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 71, 138
DpnI GATC 3 cut(s) 264, 346, 447
DpnII GATC 3 cut(s) 262, 344, 445
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 1 cut(s) 10
FaiI YATR 7 cut(s) 8, 62, 64, 149, 155, 298, 399
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 398
FauNDI CATATG 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 164, 364
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 164, 364
GluI GCNGC 2 cut(s) 164, 364
Hin1II CATG 1 cut(s) 10
HinfI GANTC 3 cut(s) 67, 110, 319
HphI GGTGA 2 cut(s) 214, 421
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 4 cut(s) 53, 74, 127, 429
Hpy188III TCNNGA 3 cut(s) 269, 350, 443
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 93, 427
HpyCH4III ACNGT 2 cut(s) 190, 433
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 34, 174, 243, 366
HpyF3I CTNAG 2 cut(s) 71, 138
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 3 cut(s) 262, 344, 445
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 7 cut(s) 103, 150, 182, 228, 314, 394, 450
Lsp1109I GCAGC 2 cut(s) 150, 350
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 4 cut(s) 176, 184, 278, 409
MalI GATC 3 cut(s) 264, 346, 447
MboI GATC 3 cut(s) 262, 344, 445
MboII GAAGA 4 cut(s) 114, 205, 232, 257
MhlI GDGCHC 1 cut(s) 335
MnlI CCTC 5 cut(s) 26, 135, 249, 333, 424
MseI TTAA 1 cut(s) 474
NdeI CATATG 1 cut(s) 62
NdeII GATC 3 cut(s) 262, 344, 445
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 184, 409
PfeI GAWTC 3 cut(s) 67, 110, 319
PkrI GCNGC 2 cut(s) 165, 365
PspEI GGTNACC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 429
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
Rsr2I CGGWCCG 1 cut(s) 429
RsrII CGGWCCG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 164, 364
Sau3AI GATC 3 cut(s) 262, 344, 445
Sau96I GGNCC 1 cut(s) 429
SduI GDGCHC 1 cut(s) 335
SetI ASST 8 cut(s) 18, 33, 81, 122, 133, 165, 231, 416
SinI GGWCC 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 1 cut(s) 405
TaaI ACNGT 2 cut(s) 190, 433
TaiI ACGT 1 cut(s) 33
TfiI GAWTC 3 cut(s) 67, 110, 319
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 184, 409
TseI GCWGC 2 cut(s) 163, 363
Tsp45I GTSAC 2 cut(s) 184, 409
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.