Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8084799 .. 8085684

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCCAATATAACCACAGAAGAAGTAGCCGACGTAATAGGATGGAACGGTGGGAACGGGAGTCCCGTACATAGGGACTATTATGTATACATGACTGGCCCTGTGAACTCAAACAAAGTAAATCTCTTTGTTGCACTTCAAGCAAGCCCTTACGATCGGCTTACTAAATACAACGATGCCATCTTAAACGGGCTCGAGATCTTCAAACTAAACAACTCAATTGGTAATTTAGCAGGGCCGAACCCATCTCCACCACCAAAGGCGATGCAGTCAAGCCCCAACAAGCCCAACAAGAAGTCGACTCATATGCTTGCCATTGCGGTCAGCGGCGCTCATGAGTTCATGACAGAAATCAAGATGCTCTCTGGACTCCGCCACCGCCATTTGGTGTCTTTGATTGGATATTGTGCCGATCAAGGTGAGATGGTCCTAGTGTACGATTACATGCCACGTGGGACTCTTAGCGATCATTTGCACCACTCCGAGAAGCCCCATCTTCCTTGGGAACAAAGACTACGAATTTGTATTGGTGTAGCGCAAGGTTTGCACTACCTTCACACACGTACCAAGGCACCGTCATTCACCGTGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.86

Weight (kDa)

8.83

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	111 - 188	3.2e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	112 - 188	9.2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AccI	GTMKAC	2 cut(s)	87, 299
AciI	CCGC	4 cut(s)	320, 327, 373, 379
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	452
AfaI	GTAC	3 cut(s)	69, 437, 565
AfiI	CCNNNNNNNGG	2 cut(s)	72, 385
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	140, 205
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	3, 97, 236
ApoI	RAATTY	1 cut(s)	519
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AspLEI	GCGC	2 cut(s)	332, 538
AspS9I	GGNCC	3 cut(s)	98, 236, 427
AsuHPI	GGTGA	2 cut(s)	431, 574
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	547, 580
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	452
BccI	CCATC	5 cut(s)	36, 188, 253, 418, 501
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	333
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	98, 236, 427
BmiI	GGNNCC	1 cut(s)	573
BmsI	GCATC	3 cut(s)	166, 255, 348
BsaAI	YACGTR	2 cut(s)	452, 563
BsaJI	CCNNGG	2 cut(s)	500, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 385
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	500, 567
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	72, 385
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	5, 99, 238
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	3 cut(s)	48, 89, 469
BslI	CCNNNNNNNGG	2 cut(s)	72, 385
BsmFI	GGGAC	3 cut(s)	48, 89, 469
BsnI	GGCC	3 cut(s)	5, 99, 238
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	154, 198, 412, 466
BspACI	CCGC	4 cut(s)	320, 327, 373, 379
BspANI	GGCC	3 cut(s)	5, 99, 238
BspHI	TCATGA	2 cut(s)	334, 342
BspLI	GGNNCC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	500, 567
BssMI	GATC	4 cut(s)	154, 198, 412, 466
BssNAI	GTATAC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	500, 567
Bst1107I	GTATAC	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	50, 576, 586
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstBAI	YACGTR	2 cut(s)	452, 563
BstC8I	GCNNGC	2 cut(s)	145, 312
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 538
BstKTI	GATC	4 cut(s)	157, 201, 415, 469
BstMBI	GATC	4 cut(s)	154, 198, 412, 466
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 544
BstNSI	RCATGY	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	5, 99, 238
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	145, 312
CciI	TCATGA	2 cut(s)	334, 342
CfoI	GCGC	2 cut(s)	332, 538
Cfr13I	GGNCC	3 cut(s)	98, 236, 427
Csp6I	GTAC	3 cut(s)	68, 436, 564
CviAII	CATG	4 cut(s)	91, 335, 343, 445
CviQI	GTAC	3 cut(s)	68, 436, 564
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	4 cut(s)	156, 200, 414, 468
DpnII	GATC	4 cut(s)	154, 198, 412, 466
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	500, 567
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	427
Eco72I	CACGTG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	500, 567
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	2 cut(s)	500, 567
FaeI	CATG	4 cut(s)	94, 338, 346, 448
FaqI	GGGAC	3 cut(s)	48, 89, 469
FatI	CATG	4 cut(s)	90, 334, 342, 444
FauNDI	CATATG	1 cut(s)	306
FblI	GTMKAC	2 cut(s)	87, 299
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	2 cut(s)	331, 537
GluI	GCNGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	5, 99, 238
HhaI	GCGC	2 cut(s)	332, 538
Hin1II	CATG	4 cut(s)	94, 338, 346, 448
Hin6I	GCGC	2 cut(s)	330, 536
HinP1I	GCGC	2 cut(s)	330, 536
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	61, 301, 369, 457
HphI	GGTGA	2 cut(s)	431, 574
Hpy166II	GTNNAC	4 cut(s)	88, 106, 300, 436
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	5 cut(s)	196, 335, 343, 355, 366
Hpy8I	GTNNAC	4 cut(s)	88, 106, 300, 436
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	3 cut(s)	50, 576, 586
HpyCH4IV	ACGT	4 cut(s)	33, 451, 562, 590
HpyCH4V	TGCA	4 cut(s)	134, 268, 475, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 544
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	4 cut(s)	33, 451, 562, 590
Hsp92II	CATG	4 cut(s)	94, 338, 346, 448
HspAI	GCGC	2 cut(s)	330, 536
Kzo9I	GATC	4 cut(s)	154, 198, 412, 466
LpnPI	CCDG	4 cut(s)	81, 114, 219, 351
LweI	GCATC	3 cut(s)	166, 255, 348
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	4 cut(s)	33, 451, 562, 590
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	4 cut(s)	156, 200, 414, 468
MboI	GATC	4 cut(s)	154, 198, 412, 466
MboII	GAAGA	3 cut(s)	32, 193, 488
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	219, 226, 519
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	70, 295, 363, 451
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	140, 544
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	4 cut(s)	154, 198, 412, 466
NlaIII	CATG	4 cut(s)	94, 338, 346, 448
NlaIV	GGNNCC	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	2 cut(s)	334, 342
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	329
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	4 cut(s)	69, 295, 363, 451
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
PpsI	GAGTC	4 cut(s)	69, 295, 363, 451
Ppu21I	YACGTR	2 cut(s)	452, 563
PspCI	CACGTG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	3 cut(s)	98, 236, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PsuI	RGATCY	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	157
RsaI	GTAC	3 cut(s)	69, 437, 565
RsaNI	GTAC	3 cut(s)	68, 436, 564
SalI	GTCGAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	4 cut(s)	154, 198, 412, 466
Sau96I	GGNCC	3 cut(s)	98, 236, 427
SchI	GAGTC	4 cut(s)	70, 295, 363, 451
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	7 cut(s)	36, 421, 454, 544, 555, 565, 593
SfaNI	GCATC	3 cut(s)	166, 255, 348
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	219, 226, 519
SsiI	CCGC	4 cut(s)	320, 327, 373, 379
SspMI	CTAG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	500, 567
TaaI	ACNGT	3 cut(s)	50, 576, 586
TaiI	ACGT	4 cut(s)	36, 454, 565, 593
TaqI	TCGA	2 cut(s)	195, 299
TasI	AATT	3 cut(s)	219, 226, 519
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	2 cut(s)	87, 299
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.