Rroxscaffold_2G00103480

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Reverse (-)
26166526 .. 26167611
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103480.1

Sequence Viewer

Length: 486 bp
ATGCCTCTAATTTATAAACTACTACGGGTTGATCTTCTTATTAGAGTTCATCATAAAAACTTGACAAGCCTTGTTGGATATTGCAATGATGAAACCAACTTGGGGCTCGTCTACGAGTTCATGGCTAATGGAAACTTGCAAGAACAACTATCGGATAGCAGCTCACGTATCTTAAGATGGGAAGATAGACTTAGGATTGCGGTAGATGCAGCACAAGGATTGGAGTACTTGCACTATGGTATTAAGCCACCAATAATCCACGGGGATGTGAAACCAGCAAACATTTTGCTGGATTATAATTTTGAAGCCAAGGAGACATTTCCGGTATTGTCGATCCAAGGTTGGACGGGGATTTCGAGTATCAACTCTGTTTGGAAAGGCTGTGGAGATAGCAATGGCATGTGCCTCTCCAAATGCCATCAAAAGGCCAACTATGAGTCAAGTGGTTATGGAACTAAAGGAGTGTATGGCAACACAAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

6.5

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 11 - 103 5e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 12 - 100 2.2e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 297
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 328
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 102, 424
AflII CTTAAG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 159, 209
ArsI GACNNNNNNTTYG 2 cut(s) 337, 369
BanII GRGCYC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 171, 221
BccI CCATC 2 cut(s) 171, 426
BcoDI GTCTC 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 172
BisI GCNGC 2 cut(s) 160, 210
BlsI GCNGC 2 cut(s) 161, 211
BmcAI AGTACT 1 cut(s) 227
BmsI GCATC 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 259, 309, 337
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 424
Bse3DI GCAATG 2 cut(s) 91, 400
BseDI CCNNGG 3 cut(s) 259, 309, 337
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 102, 424
BseMI GCAATG 2 cut(s) 91, 400
BseXI GCAGC 2 cut(s) 171, 221
BshFI GGCC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 102, 424
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 31, 333
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 428
BspPI GGATC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 91, 400
BssECI CCNNGG 3 cut(s) 259, 309, 337
BssMI GATC 2 cut(s) 31, 333
BssT1I CCWWGG 2 cut(s) 309, 337
BstAFI CTTAAG 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 34, 336
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 31, 333
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 171, 221
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 271
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 121, 400
CviJI RGCY 8 cut(s) 69, 106, 125, 162, 247, 308, 381, 428
CviKI_1 RGCY 8 cut(s) 69, 106, 125, 162, 247, 308, 381, 428
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 33, 335
DpnII GATC 2 cut(s) 31, 333
Eco130I CCWWGG 2 cut(s) 309, 337
Eco24I GRGCYC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 309, 337
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 309, 337
FaeI CATG 2 cut(s) 124, 403
FaiI YATR 9 cut(s) 15, 54, 122, 237, 297, 401, 435, 450, 468
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 120, 399
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 160, 210
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 160, 210
GluI GCNGC 2 cut(s) 160, 210
HaeIII GGCC 1 cut(s) 428
HapII CCGG 1 cut(s) 323
Hin1II CATG 2 cut(s) 124, 403
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 4 cut(s) 84, 139, 209, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 124, 403
Kzo9I GATC 2 cut(s) 31, 333
LpnPI CCDG 3 cut(s) 275, 288, 336
Lsp1109I GCAGC 2 cut(s) 171, 221
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 166
MalI GATC 2 cut(s) 33, 335
MboI GATC 2 cut(s) 31, 333
MboII GAAGA 2 cut(s) 26, 194
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 9, 298
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 55, 323
MnlI CCTC 2 cut(s) 15, 416
MseI TTAA 2 cut(s) 173, 243
MslI CAYNNNNRTG 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 172
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 31, 333
NlaIII CATG 2 cut(s) 124, 403
NspI RCATGY 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PkrI GCNGC 2 cut(s) 161, 211
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 167
PsiI TTATAA 2 cut(s) 15, 297
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 2 cut(s) 173, 243
SatI GCNGC 2 cut(s) 160, 210
Sau3AI GATC 2 cut(s) 31, 333
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 164, 169, 343
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 9, 298
SsiI CCGC 1 cut(s) 200
StyI CCWWGG 2 cut(s) 309, 337
TaiI ACGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 332, 356
TasI AATT 2 cut(s) 9, 298
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 2 cut(s) 173, 243
Tru9I TTAA 2 cut(s) 173, 243
TseI GCWGC 2 cut(s) 159, 209
TspDTI ATGAA 3 cut(s) 38, 105, 109
Vha464I CTTAAG 1 cut(s) 172
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.