Rroxscaffold_2G00103870

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Reverse (-)
26898036 .. 26898834
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103870.1

Sequence Viewer

Length: 453 bp
ATGACCGCCGTCCAAGCCTTAACCAAAGCAGCGAGCCAATCCGAAGAACCGCCGCCGTCTCCCCGACGAGAGAGACACGAGAGCAACAACCTTCCTAAGAGAACCCCACACCACCAGGGAACAAACATAACCCATCCGGCGCAACCACAAGCATACCAACGCGGCCAAAGAGGGCGCCGCCGTACGAGAACCGTCGACGACAGGGAAAACAAGTTTTTCCCTAAGCGTGTGGAGCACCATTCAGCCGAGTCAATCGAGCCATCATCACGACGTCAATTTACTTACTCCGAGGTACTCCACATCACCAATAATTTTGCGAGAATTATTGGTAGAAGAGGATTTGGAATAGTATATCATGGCAACATAGGTGACACCGAAGTAGCTGTGAAGATGCTCTCACCATCTTCGCTCAAGGATATCAAGAATTTCATTCGTAGGTACTATTACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.36

Weight (kDa)

10.58

Isoelectric Point (pI)

81.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 162
AciI CCGC 5 cut(s) 6, 50, 53, 162, 178
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 424
AcyI GRCGYC 2 cut(s) 175, 271
AfaI GTAC 3 cut(s) 184, 294, 440
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 63, 67
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 424
AspLEI GCGC 2 cut(s) 142, 177
AsuHPI GGTGA 3 cut(s) 295, 380, 390
BanI GGYRCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 141, 268, 409
BceAI ACGGC 2 cut(s) 40, 165
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 63, 67
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 4 cut(s) 30, 53, 163, 178
BlsI GCNGC 4 cut(s) 31, 54, 164, 179
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 381
BoxI GACNNNNGTC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 175, 271
BsaJI CCNNGG 2 cut(s) 115, 288
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 288
BseGI GGATG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 137
BsiWI CGTACG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 63, 67
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 237
BspACI CCGC 5 cut(s) 6, 50, 53, 162, 178
BspANI GGCC 1 cut(s) 165
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 115, 288
BssNI GRCGYC 2 cut(s) 175, 271
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 2 cut(s) 175, 271
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 96, 222
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 142, 177
BstMAI GTCTC 2 cut(s) 63, 67
BstMWI GCNNNNNNNGC 2 cut(s) 14, 232
BstNI CCWGG 1 cut(s) 116
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 142, 177
Csp6I GTAC 3 cut(s) 183, 293, 439
CviAII CATG 1 cut(s) 356
CviJI RGCY 6 cut(s) 17, 36, 165, 245, 259, 383
CviKI_1 RGCY 6 cut(s) 17, 36, 165, 245, 259, 383
CviQI GTAC 3 cut(s) 183, 293, 439
DdeI CTNAG 2 cut(s) 96, 222
DinI GGCGCC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 418
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 1 cut(s) 359
FaiI YATR 5 cut(s) 128, 154, 352, 357, 365
FatI CATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 30, 53, 163, 178
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 30, 53, 163, 178
GlaI GCGC 2 cut(s) 141, 176
GluI GCNGC 4 cut(s) 30, 53, 163, 178
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 137
HhaI GCGC 2 cut(s) 142, 177
Hin1I GRCGYC 2 cut(s) 175, 271
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 2 cut(s) 140, 175
HinP1I GCGC 2 cut(s) 140, 175
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 137
HphI GGTGA 3 cut(s) 295, 380, 390
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 43, 289
Hpy188III TCNNGA 2 cut(s) 267, 421
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 4 cut(s) 69, 197, 200, 273
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 232
HpyF3I CTNAG 2 cut(s) 96, 222
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 2 cut(s) 175, 271
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 2 cut(s) 140, 175
KasI GGCGCC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 101, 128, 150, 187
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 381
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 368
MboII GAAGA 4 cut(s) 56, 345, 396, 400
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 275, 310, 321, 424
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 3 cut(s) 164, 283, 329
MseI TTAA 2 cut(s) 20, 451
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 14, 232
NarI GGCGCC 1 cut(s) 175
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 368
Pfl23II CGTACG 1 cut(s) 182
PkrI GCNGC 4 cut(s) 31, 54, 164, 179
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspLI CGTACG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 176
RsaI GTAC 3 cut(s) 184, 294, 440
RsaNI GTAC 3 cut(s) 183, 293, 439
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 20, 451
SatI GCNGC 4 cut(s) 30, 53, 163, 178
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 237
SetI ASST 6 cut(s) 93, 274, 294, 370, 385, 440
SfaNI GCATC 1 cut(s) 381
SfoI GGCGCC 1 cut(s) 176
SgrDI CGTCGACG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 4 cut(s) 275, 310, 321, 424
SsiI CCGC 5 cut(s) 6, 50, 53, 162, 178
SspDI GGCGCC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 195, 255
TasI AATT 4 cut(s) 275, 310, 321, 424
TauI GCSGC 3 cut(s) 55, 165, 180
Tru1I TTAA 2 cut(s) 20, 451
Tru9I TTAA 2 cut(s) 20, 451
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 418
XapI RAATTY 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 195
ZraI GACGTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.