Rroxscaffold_2G00103960

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Reverse (-)
26978579 .. 26981406
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103960.1

Sequence Viewer

Length: 441 bp
ATGGAAACCACAATAATTTTCATATATAGAGAATTCAGTCAAGTTAATGGACCAAATCTACGAATATGTCTAACATGGTCTCCATCAGTTTCCAATAATGAGGAAGTATTTCAATGGGTAGACCTCAACGGCTCTGTTTTCAGGGATAAGCCTGATGGGGTTTACACATGCTCTCGTCTTCATGTACGGCAAATGTGGCAAGTCGTGGAATGCCCGAAGGTGTTCGACGAAACGCCCTCACGAAATGTAGTGACTTGGAACTTTTTGATTTCTGGTCTGGTTATTTGCAAGCTGGTTCGCCACTCGAGCAACTCATTTGTTTCCGGACATGTTAAGGGTCGGAACGAGCCGCCAACGACGTTTAGTTTCTCGAGGGTGTTGGTGTCTTGCGCACGATTAGAAGTCGAAGAGCTTGGAGCTCGGTGCATGGTTTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.75

Weight (kDa)

7.62

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 391
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 323
AciI CCGC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 3 cut(s) 292, 412, 419
AluI AGCT 3 cut(s) 292, 412, 419
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 84
Ama87I CYCGRG 2 cut(s) 304, 370
Aor13HI TCCGGA 1 cut(s) 323
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 2 cut(s) 108, 221
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 50
AvaI CYCGRG 2 cut(s) 304, 370
AvaII GGWCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 421
BccI CCATC 2 cut(s) 91, 149
BceAI ACGGC 2 cut(s) 145, 203
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 2 cut(s) 304, 370
BmgT120I GGNCC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
BseAI TCCGGA 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 2 cut(s) 304, 370
BsiSI CCGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 84
BsoBI CYCGRG 2 cut(s) 304, 370
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 323
BspACI CCGC 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 290
BstHHI GCGC 1 cut(s) 392
BstMAI GTCTC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 196, 306
BstNSI RCATGY 2 cut(s) 171, 332
BstV2I GAAGAC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 185
CviAII CATG 5 cut(s) 75, 168, 182, 329, 427
CviJI RGCY 7 cut(s) 132, 151, 292, 349, 412, 419, 437
CviKI_1 RGCY 7 cut(s) 132, 151, 292, 349, 412, 419, 437
CviQI GTAC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 2 cut(s) 304, 370
EcoICRI GAGCTC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 5 cut(s) 78, 171, 185, 332, 430
FaiI YATR 9 cut(s) 23, 25, 27, 67, 76, 169, 183, 330, 428
FatI CATG 5 cut(s) 74, 167, 181, 328, 426
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 350
FspI TGCGCA 1 cut(s) 391
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 350
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 392
Hin1II CATG 5 cut(s) 78, 171, 185, 332, 430
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HpaII CCGG 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 121, 163
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 3 cut(s) 240, 324, 370
Hpy8I GTNNAC 2 cut(s) 121, 163
Hpy99I CGWCG 2 cut(s) 230, 361
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 2 cut(s) 288, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 306
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 5 cut(s) 78, 171, 185, 332, 430
HspAI GCGC 1 cut(s) 390
Kpn2I TCCGGA 1 cut(s) 323
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 6 cut(s) 127, 165, 258, 263, 278, 337
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 250
MboII GAAGA 2 cut(s) 170, 419
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 15, 32
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 4 cut(s) 94, 134, 247, 366
MroI TCCGGA 1 cut(s) 323
MroXI GAANNNNTTC 2 cut(s) 108, 221
MseI TTAA 2 cut(s) 45, 333
MspI CCGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 196, 306
NlaIII CATG 5 cut(s) 78, 171, 185, 332, 430
NmuCI GTSAC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 391
NspI RCATGY 2 cut(s) 171, 332
PaeR7I CTCGAG 2 cut(s) 304, 370
PciI ACATGT 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 108, 221
PkrI GCNGC 1 cut(s) 351
PscI ACATGT 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 50
PspXI VCTCGAGB 1 cut(s) 304
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 45, 333
SatI GCNGC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 421
SetI ASST 6 cut(s) 126, 222, 294, 362, 414, 421
Sfr274I CTCGAG 2 cut(s) 304, 370
SinI GGWCC 1 cut(s) 50
SlaI CTCGAG 2 cut(s) 304, 370
SmlI CTYRAG 2 cut(s) 304, 370
SmoI CTYRAG 2 cut(s) 304, 370
Sse9I AATT 2 cut(s) 15, 32
SsiI CCGC 1 cut(s) 350
SstI GAGCTC 1 cut(s) 421
TaiI ACGT 1 cut(s) 362
TaqI TCGA 4 cut(s) 225, 305, 371, 405
TasI AATT 2 cut(s) 15, 32
TauI GCSGC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 45, 333
Tru9I TTAA 2 cut(s) 45, 333
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 10, 170
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 32
XceI RCATGY 2 cut(s) 171, 332
XhoI CTCGAG 2 cut(s) 304, 370
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 2 cut(s) 108, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.