Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39687291 .. 39691882

Gene Structure 4592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTGGGTCGAGCCCCGAATTCCGACCACCTTGGACAACCCATACGAGCCGGTGACCGTGTCACTAGACCGCCGTGGTATGGGCTTCGAGCCGAGCAAATTACGATTCGGTTTCGATATCCTGGATTAATCCCTCACCCTCTCCCTCGCCCTCTCCGCCTTCATCCTCGCCGAATGCCGTCCCATTGGTGTAAAGGAATCCGGTCATCGGTGCCTCTTCGACAAGAGGATCTCACAGAATTGAGTGGAGATGCCTTTGGAGAGGCTGGTAAATATGCAAAAGCTTCCAAATTGAAGCCGAAAGAGTACAAACAGGTTGAAAAGCTGATTTTGGTTGGTATCGGCATTGGAGTTTCTTGGAATGTTGTTCTTCCCGAATGGTTGATTACCATCTTAGTAATTGTGGTTCTCTTAGATCGTTTCAAAAGATCTATCGAACCGGTACGTTCCCATAAAGATCTGGATAAGGATGCGGCCCCATACTTTAAGAAAGCAGTCAAGTTTTATGATAGTCTTGCGAAGCAGCTAGTTAGCCAGGGTCATGTCTTAGACCTCTTCGCATCTGCACTTGATCAGGTTCCAATAGGGACGCCATTGAGTGCACTTATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTCTGGACCTGTTTACAGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAAACGGCATAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

267

Amino Acids

29.76

Weight (kDa)

9.93

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	149 - 195	8.2e-11	Sec23/Sec24 trunk domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	3 cut(s)	71, 157, 473
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	3 cut(s)	19, 614, 764
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	308, 444
AfiI	CCNNNNNNNGG	2 cut(s)	80, 208
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	295, 320, 424, 614, 664
AjnI	CCWGG	2 cut(s)	121, 534
AluBI	AGCT	5 cut(s)	284, 325, 526, 683, 776
AluI	AGCT	5 cut(s)	284, 325, 526, 683, 776
Alw21I	GWGCWC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	523, 683, 773
ApoI	RAATTY	3 cut(s)	19, 614, 764
AseI	ATTAAT	1 cut(s)	128
AsiGI	ACCGGT	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	646
AspS9I	GGNCC	2 cut(s)	475, 734
AsuHPI	GGTGA	3 cut(s)	65, 128, 731
AvaII	GGWCC	1 cut(s)	734
BaeGI	GKGCMC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	535, 670, 785
BccI	CCATC	2 cut(s)	398, 752
BceAI	ACGGC	2 cut(s)	58, 163
BciT130I	CCWGG	2 cut(s)	123, 536
BclI	TGATCA	1 cut(s)	571
BfaI	CTAG	3 cut(s)	66, 527, 750
BglII	AGATCT	2 cut(s)	428, 457
BisI	GCNGC	4 cut(s)	474, 524, 684, 774
BlsI	GCNGC	4 cut(s)	475, 525, 685, 775
Bme1390I	CCNGG	2 cut(s)	123, 536
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	475, 734
BmiI	GGNNCC	3 cut(s)	213, 477, 579
BmrFI	CCNGG	2 cut(s)	123, 536
BmsI	GCATC	3 cut(s)	241, 460, 569
BsaBI	GATNNNNATC	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	3 cut(s)	31, 74, 535
BsaWI	WCCGGW	2 cut(s)	201, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 208
Bse118I	RCCGGY	2 cut(s)	50, 439
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	123, 536
BseDI	CCNNGG	3 cut(s)	31, 74, 535
BseGI	GGATG	2 cut(s)	163, 475
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	80, 208
BseMI	GCAATG	1 cut(s)	768
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	535, 670, 785
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	3 cut(s)	51, 202, 440
BslFI	GGGAC	2 cut(s)	166, 601
BslI	CCNNNNNNNGG	2 cut(s)	80, 208
BsmFI	GGGAC	2 cut(s)	166, 601
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	16, 604
Bsp143I	GATC	5 cut(s)	229, 415, 428, 457, 571
BspACI	CCGC	3 cut(s)	71, 157, 473
BspANI	GGCC	1 cut(s)	476
BspLI	GGNNCC	3 cut(s)	213, 477, 579
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	2 cut(s)	50, 439
BssAI	RCCGGY	2 cut(s)	50, 439
BssECI	CCNNGG	3 cut(s)	31, 74, 535
BssMI	GATC	5 cut(s)	229, 415, 428, 457, 571
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	123, 536
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	222, 560
BstACI	GRCGYC	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	394, 412, 547
BstDSI	CCRYGG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	163, 475
BstKTI	GATC	5 cut(s)	232, 418, 431, 460, 574
BstMBI	GATC	5 cut(s)	229, 415, 428, 457, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	123, 536
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	121, 534
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	535, 670, 785
BstX2I	RGATCY	3 cut(s)	229, 428, 457
BstYI	RGATCY	3 cut(s)	229, 428, 457
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	163, 475
BtsIMutI	CAGTG	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	50, 439
Cfr13I	GGNCC	2 cut(s)	475, 734
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	307, 443
CspAI	ACCGGT	1 cut(s)	439
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	2 cut(s)	307, 443
DdeI	CTNAG	3 cut(s)	394, 412, 547
DpnI	GATC	5 cut(s)	231, 417, 430, 459, 573
DpnII	GATC	5 cut(s)	229, 415, 428, 457, 571
Eam1104I	CTCTTC	2 cut(s)	222, 560
EarI	CTCTTC	2 cut(s)	222, 560
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	734
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	121, 534
EcoRV	GATATC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	545
FaiI	YATR	9 cut(s)	44, 81, 276, 453, 481, 507, 543, 608, 797
FaqI	GGGAC	2 cut(s)	166, 601
FatI	CATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	474, 524, 684, 774
FokI	GGATG	2 cut(s)	150, 482
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	474, 524, 684, 774
FspBI	CTAG	3 cut(s)	66, 527, 750
GluI	GCNGC	4 cut(s)	474, 524, 684, 774
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	3 cut(s)	51, 202, 440
HgaI	GACGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	1 cut(s)	545
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	2 cut(s)	106, 198
HpaII	CCGG	3 cut(s)	51, 202, 440
HphI	GGTGA	3 cut(s)	65, 128, 731
Hpy166II	GTNNAC	3 cut(s)	602, 742, 790
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	374, 461, 732
Hpy8I	GTNNAC	3 cut(s)	602, 742, 790
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	278, 566, 602, 686, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	3 cut(s)	394, 412, 547
HpySE526I	ACGT	1 cut(s)	445
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	1 cut(s)	545
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	229, 415, 428, 457, 571
Lsp1109I	GCAGC	3 cut(s)	535, 670, 785
LweI	GCATC	3 cut(s)	241, 460, 569
MaeI	CTAG	3 cut(s)	66, 527, 750
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	2 cut(s)	53, 61
MalI	GATC	5 cut(s)	231, 417, 430, 459, 573
MboI	GATC	5 cut(s)	229, 415, 428, 457, 571
MboII	GAAGA	3 cut(s)	209, 362, 547
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	3 cut(s)	229, 428, 457
MhlI	GDGCHC	2 cut(s)	16, 604
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	646
MseI	TTAA	4 cut(s)	128, 486, 618, 780
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	3 cut(s)	51, 202, 440
MspR9I	CCNGG	2 cut(s)	123, 536
MunI	CAATTG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	123, 536
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	5 cut(s)	229, 415, 428, 457, 571
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	3 cut(s)	213, 477, 579
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	53, 61
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	646
PfeI	GAWTC	2 cut(s)	106, 198
PflFI	GACNNNGTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	475, 525, 685, 775
PshBI	ATTAAT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	121, 534
PspEI	GGTNACC	1 cut(s)	53
PspGI	CCWGG	2 cut(s)	121, 534
PspN4I	GGNNCC	3 cut(s)	213, 477, 579
PspPI	GGNCC	2 cut(s)	475, 734
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
PsuI	RGATCY	3 cut(s)	229, 428, 457
PsyI	GACNNNGTC	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	308, 444
RsaNI	GTAC	2 cut(s)	307, 443
SaqAI	TTAA	4 cut(s)	128, 486, 618, 780
SatI	GCNGC	4 cut(s)	474, 524, 684, 774
Sau3AI	GATC	5 cut(s)	229, 415, 428, 457, 571
Sau96I	GGNCC	2 cut(s)	475, 734
ScrFI	CCNGG	2 cut(s)	123, 536
SduI	GDGCHC	2 cut(s)	16, 604
SfaNI	GCATC	3 cut(s)	241, 460, 569
SinI	GGWCC	1 cut(s)	734
SsiI	CCGC	3 cut(s)	71, 157, 473
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	3 cut(s)	66, 527, 750
StyD4I	CCNGG	2 cut(s)	121, 534
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	5 cut(s)	10, 88, 115, 220, 435
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	106, 198
Tru1I	TTAA	4 cut(s)	128, 486, 618, 780
Tru9I	TTAA	4 cut(s)	128, 486, 618, 780
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	2 cut(s)	53, 61
TseI	GCWGC	3 cut(s)	523, 683, 773
Tsp45I	GTSAC	2 cut(s)	53, 61
TspDTI	ATGAA	2 cut(s)	152, 757
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	3 cut(s)	19, 614, 764
XmnI	GAANNNNTTC	1 cut(s)	646
XspI	CTAG	3 cut(s)	66, 527, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.