TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 31 - 95 | 9.6e-06 | Disease resistance protein Roq1-like, winged-helix domain |
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No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 177 |
| AgsI | TTSAA | 1 cut(s) | 16 |
| AluBI | AGCT | 3 cut(s) | 10, 34, 203 |
| AluI | AGCT | 3 cut(s) | 10, 34, 203 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| Ama87I | CYCGRG | 2 cut(s) | 63, 239 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 325, 357 |
| AspS9I | GGNCC | 1 cut(s) | 341 |
| AvaI | CYCGRG | 2 cut(s) | 63, 239 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| BccI | CCATC | 1 cut(s) | 221 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BfaI | CTAG | 2 cut(s) | 191, 345 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmeT110I | CYCGRG | 2 cut(s) | 63, 239 |
| BmgT120I | GGNCC | 1 cut(s) | 341 |
| BmsI | GCATC | 1 cut(s) | 234 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 274, 304 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 177 |
| BseGI | GGATG | 1 cut(s) | 308 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 177 |
| BsiHKCI | CYCGRG | 2 cut(s) | 63, 239 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 177 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsoBI | CYCGRG | 2 cut(s) | 63, 239 |
| Bsp143I | GATC | 2 cut(s) | 76, 316 |
| BssMI | GATC | 2 cut(s) | 76, 316 |
| Bst6I | CTCTTC | 1 cut(s) | 112 |
| BstDEI | CTNAG | 1 cut(s) | 183 |
| BstF5I | GGATG | 1 cut(s) | 308 |
| BstKTI | GATC | 2 cut(s) | 79, 319 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 2 cut(s) | 76, 316 |
| BstNSI | RCATGY | 2 cut(s) | 86, 105 |
| BtsCI | GGATG | 1 cut(s) | 308 |
| Cfr13I | GGNCC | 1 cut(s) | 341 |
| CseI | GACGC | 1 cut(s) | 257 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 126, 161 |
| CviAII | CATG | 5 cut(s) | 83, 102, 174, 222, 248 |
| CviJI | RGCY | 5 cut(s) | 10, 34, 163, 182, 203 |
| CviKI_1 | RGCY | 5 cut(s) | 10, 34, 163, 182, 203 |
| DdeI | CTNAG | 1 cut(s) | 183 |
| DpnI | GATC | 2 cut(s) | 78, 318 |
| DpnII | GATC | 2 cut(s) | 76, 316 |
| Eam1104I | CTCTTC | 1 cut(s) | 112 |
| EarI | CTCTTC | 1 cut(s) | 112 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| Eco88I | CYCGRG | 2 cut(s) | 63, 239 |
| EcoO109I | RGGNCCY | 1 cut(s) | 341 |
| EcoT22I | ATGCAT | 1 cut(s) | 249 |
| FaeI | CATG | 5 cut(s) | 86, 105, 177, 225, 251 |
| FatI | CATG | 5 cut(s) | 82, 101, 173, 221, 247 |
| FokI | GGATG | 1 cut(s) | 315 |
| FspBI | CTAG | 2 cut(s) | 191, 345 |
| HgaI | GACGC | 1 cut(s) | 257 |
| Hin1II | CATG | 5 cut(s) | 86, 105, 177, 225, 251 |
| HindIII | AAGCTT | 1 cut(s) | 32 |
| HinfI | GANTC | 3 cut(s) | 120, 187, 285 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 125 |
| Hpy188III | TCNNGA | 3 cut(s) | 65, 227, 241 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 101, 234, 247, 355 |
| HpyF3I | CTNAG | 1 cut(s) | 183 |
| Hsp92II | CATG | 5 cut(s) | 86, 105, 177, 225, 251 |
| Kzo9I | GATC | 2 cut(s) | 76, 316 |
| LpnPI | CCDG | 2 cut(s) | 66, 240 |
| LweI | GCATC | 1 cut(s) | 234 |
| MaeI | CTAG | 2 cut(s) | 191, 345 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 2 cut(s) | 78, 318 |
| MboI | GATC | 2 cut(s) | 76, 316 |
| MboII | GAAGA | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 129 |
| MnlI | CCTC | 2 cut(s) | 107, 181 |
| Mph1103I | ATGCAT | 1 cut(s) | 249 |
| NdeII | GATC | 2 cut(s) | 76, 316 |
| NlaIII | CATG | 5 cut(s) | 86, 105, 177, 225, 251 |
| NsiI | ATGCAT | 1 cut(s) | 249 |
| NspI | RCATGY | 2 cut(s) | 86, 105 |
| PaeR7I | CTCGAG | 2 cut(s) | 63, 239 |
| PfeI | GAWTC | 2 cut(s) | 187, 285 |
| PleI | GAGTC | 1 cut(s) | 128 |
| PpsI | GAGTC | 1 cut(s) | 128 |
| PpuMI | RGGWCCY | 1 cut(s) | 341 |
| Psp5II | RGGWCCY | 1 cut(s) | 341 |
| PspPI | GGNCC | 1 cut(s) | 341 |
| PspPPI | RGGWCCY | 1 cut(s) | 341 |
| Sau3AI | GATC | 2 cut(s) | 76, 316 |
| Sau96I | GGNCC | 1 cut(s) | 341 |
| SchI | GAGTC | 1 cut(s) | 129 |
| SetI | ASST | 5 cut(s) | 12, 36, 205, 313, 343 |
| SfaNI | GCATC | 1 cut(s) | 234 |
| Sfr274I | CTCGAG | 2 cut(s) | 63, 239 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SlaI | CTCGAG | 2 cut(s) | 63, 239 |
| SmlI | CTYRAG | 2 cut(s) | 63, 239 |
| SmoI | CTYRAG | 2 cut(s) | 63, 239 |
| SspMI | CTAG | 2 cut(s) | 191, 345 |
| TaqI | TCGA | 2 cut(s) | 64, 240 |
| TfiI | GAWTC | 2 cut(s) | 187, 285 |
| TspDTI | ATGAA | 1 cut(s) | 196 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| XceI | RCATGY | 2 cut(s) | 86, 105 |
| XhoI | CTCGAG | 2 cut(s) | 63, 239 |
| XspI | CTAG | 2 cut(s) | 191, 345 |
| Zsp2I | ATGCAT | 1 cut(s) | 249 |