Rroxscaffold_2G00121880

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Forward (+)
54674043 .. 54693225
19183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121880.1

Sequence Viewer

Length: 756 bp
ATGAAAGAGGACAACTATTGGGTATATGTTACACTAACAACTGGGGATAAATCTCGTAAGAGGATGTCCCGAGAACTTAAGCACATCAGGCCATTGTCAGAAGAACAGCATCAACTATTGGTTATTTACATAGCCCCGGCACAGATTCCCGAAGCGTTGTTCACTCAGATATTAACAAATGCAATGGACTTTTACATAGATATCAGTGATAGCCCTCATGTAAAGGTTCAAATTAAGATGTGGGTTCCGTATTGTGTACCAGGAAGATATGCAAGGGACTGGTCTGGCTGTCGTGCTGCTTATTGTGTCTTCAAGAGAGTTGAAATCTCCAAGTTGAAATTGTTCATGCCTTTCATCAACCAAGGCAACTCTTCGAACTCCAACCGCCTCTCGAATGTGTTCGATGATGATAATTGGTTGGGGTTTGCCATATGTTCTCGTCCATCGGGTACTGTGCGCTCGACAGTGCGATTGGCACCATCGCCGGCCGATTGGTTGCTTCCTCCTCCTCGGTTGGTTGCCGAGCTTGAAATTCCATTTGTTGTTGGGTCGAAAGCTCCAATAGTTGAAGGGAGTAAGGACAGAGCAAATCGTATTGTCACATTCGGGAGCGAAGCGTACGATGAAGTAGAAACTGTTGCAGATCGAGAATGGAGAGAGGTTGGGGAAAAAAGGAGTTTCTTCGTTGAAATAAATGATGATTTGGTGGTATCATCTGCACTCGAGAAGCAATTCATTTGTTCTAAGTTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

251

Amino Acids

28.72

Weight (kDa)

6.84

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 531
AfaI GTAC 3 cut(s) 258, 451, 620
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 7 cut(s) 230, 313, 323, 337, 530, 569, 689
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 526, 557
AluI AGCT 2 cut(s) 526, 557
Ama87I CYCGRG 2 cut(s) 69, 722
AoxI GGCC 2 cut(s) 89, 486
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 531
Asp700I GAANNNNTTC 3 cut(s) 341, 398, 731
AspLEI GCGC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 742
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 2 cut(s) 69, 722
BanI GGYRCC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 451, 487
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 1 cut(s) 137
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 137, 261
BmeT110I CYCGRG 2 cut(s) 69, 722
BmiI GGNNCC 2 cut(s) 246, 477
BmrFI CCNGG 2 cut(s) 137, 261
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 301
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 135, 361, 509
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 46, 284
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 135, 361, 509
BseGI GGATG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 46, 284
BseRI GAGGAG 2 cut(s) 495, 498
BseX3I CGGCCG 1 cut(s) 486
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 489
BshFI GGCC 2 cut(s) 91, 488
BshNI GGYRCC 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 489
BsiHKCI CYCGRG 2 cut(s) 69, 722
BsiSI CCGG 2 cut(s) 137, 485
BsiWI CGTACG 1 cut(s) 618
BslFI GGGAC 2 cut(s) 52, 290
BsmFI GGGAC 2 cut(s) 52, 290
BsnI GGCC 2 cut(s) 91, 488
BsoBI CYCGRG 2 cut(s) 69, 722
Bsp119I TTCGAA 1 cut(s) 374
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 91, 488
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 246, 477
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 475
BspTI CTTAAG 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 2 cut(s) 46, 284
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 3 cut(s) 135, 361, 509
BssMI GATC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 3 cut(s) 454, 466, 637
Bst6I CTCTTC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 165, 744
BstF5I GGATG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 1 cut(s) 646
BstMBI GATC 1 cut(s) 643
BstMCI CGRYCG 1 cut(s) 489
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 135, 259
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 301
BstZI CGGCCG 1 cut(s) 486
BsuRI GGCC 2 cut(s) 91, 488
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 211, 471
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 484
Csp6I GTAC 3 cut(s) 257, 450, 619
CviAII CATG 2 cut(s) 218, 346
CviJI RGCY 7 cut(s) 91, 134, 213, 288, 488, 526, 557
CviKI_1 RGCY 7 cut(s) 91, 134, 213, 288, 488, 526, 557
CviQI GTAC 3 cut(s) 257, 450, 619
DdeI CTNAG 2 cut(s) 165, 744
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 486
EagI CGGCCG 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EclXI CGGCCG 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 361
Eco32I GATATC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 486
Eco88I CYCGRG 2 cut(s) 69, 722
EcoRII CCWGG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 221, 349
FaiI YATR 9 cut(s) 25, 27, 131, 197, 219, 270, 347, 431, 433
FaqI GGGAC 2 cut(s) 52, 290
FatI CATG 2 cut(s) 217, 345
FauNDI CATATG 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 1 cut(s) 458
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 2 cut(s) 91, 488
HapII CCGG 2 cut(s) 137, 485
HhaI GCGC 1 cut(s) 459
Hin1II CATG 2 cut(s) 221, 349
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 1 cut(s) 145
HpaII CCGG 2 cut(s) 137, 485
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 3 cut(s) 162, 257, 750
Hpy188I TCNGA 2 cut(s) 100, 168
Hpy188III TCNNGA 7 cut(s) 69, 149, 313, 391, 607, 647, 724
Hpy8I GTNNAC 3 cut(s) 162, 257, 750
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 3 cut(s) 454, 466, 637
HpyCH4V TGCA 4 cut(s) 182, 272, 641, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 165, 744
Hsp92II CATG 2 cut(s) 221, 349
HspAI GCGC 1 cut(s) 457
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 2 cut(s) 562, 609
LpnPI CCDG 8 cut(s) 27, 73, 150, 246, 265, 270, 273, 498
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 28, 598
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 5 cut(s) 113, 276, 301, 363, 673
MluCI AATT 5 cut(s) 231, 338, 412, 531, 731
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 54, 225, 398, 513, 516, 519, 652
MroNI GCCGGC 1 cut(s) 484
MroXI GAANNNNTTC 3 cut(s) 341, 398, 731
MseI TTAA 3 cut(s) 78, 173, 234
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 2 cut(s) 137, 485
MspR9I CCNGG 2 cut(s) 137, 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 88
NaeI GCCGGC 1 cut(s) 486
NciI CCSGG 1 cut(s) 137
NdeI CATATG 1 cut(s) 431
NdeII GATC 1 cut(s) 643
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 221, 349
NlaIV GGNNCC 2 cut(s) 246, 477
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 598
NspV TTCGAA 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 722
PdiI GCCGGC 1 cut(s) 486
PdmI GAANNNNTTC 3 cut(s) 341, 398, 731
PfeI GAWTC 1 cut(s) 145
Pfl23II CGTACG 1 cut(s) 618
PkrI GCNGC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspLI CGTACG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 246, 477
RsaI GTAC 3 cut(s) 258, 451, 620
RsaNI GTAC 3 cut(s) 257, 450, 619
SaqAI TTAA 3 cut(s) 78, 173, 234
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 643
ScrFI CCNGG 2 cut(s) 137, 261
SetI ASST 5 cut(s) 228, 528, 559, 663, 755
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 374
SlaI CTCGAG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 77, 722
SmoI CTYRAG 2 cut(s) 77, 722
Sse9I AATT 5 cut(s) 231, 338, 412, 531, 731
SsiI CCGC 1 cut(s) 385
StyD4I CCNGG 2 cut(s) 135, 259
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 454, 466, 637
TaqI TCGA 7 cut(s) 374, 392, 402, 461, 551, 646, 723
TasI AATT 5 cut(s) 231, 338, 412, 531, 731
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 78, 173, 234
Tru9I TTAA 3 cut(s) 78, 173, 234
TscAI CASTG 2 cut(s) 211, 471
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 5 cut(s) 17, 334, 343, 639, 724
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 2 cut(s) 211, 471
Vha464I CTTAAG 1 cut(s) 77
XapI RAATTY 1 cut(s) 531
XhoI CTCGAG 1 cut(s) 722
XmnI GAANNNNTTC 3 cut(s) 341, 398, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.