Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55008412 .. 55020523

Gene Structure 12112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCATTATACTTGGGTGGAAATCTGTGGTGGGGGTCATTTCACGATGATCTTACAAGGTTTGTATCCTTGGAAGAATTGGACATTGACAATGCCACTATGAGTGGGTCGCTCCCAAAGAGTTTTCGGCAACTTTCCCGGCTAAGAACCTTGAGTCAAACCACTTCTCTAGAAGCATTCCCTCAAGTATATGTAGTCGCCTCTCATTCGTGTTTTGGACCTCTCTCAAAACAATATATACGGAGTCTTGCCACATTACCTCAACAATTTGACGACTTTCTCTTCGGTTTCTCGAAGAAACAATTTGATGGGGTGATTCTTGGAAGGTTTGGTCAGTTGGAGGTGCTAGAAGTTCTTGATTTGTCAAGAAACCACCTATCTGGTAGTATTCACGATAGTTTTAGGAACTTGCATTCTATAGTTGTCTTGGACTTATCGGTCAACAACTTGTCGGGAAGAATTCCATCCAGCCCCCAACTTATGACTTTTAGTGAATCTTCATTCACTGGAAATATTGGACTTTGTGGGCCACGACTAAACACAAAATGCCGGGAGATGGACCGAGTGAAGATCCAAAAGTCACCGGAGGCACTAAAAGTGATGGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0016020 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

7.77

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	110 - 150	1.8e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	556
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	459
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspS9I	GGNCC	3 cut(s)	218, 527, 559
AsuC2I	CCSGG	2 cut(s)	139, 551
AsuHPI	GGTGA	2 cut(s)	325, 573
AvaII	GGWCC	2 cut(s)	218, 559
BccI	CCATC	4 cut(s)	302, 472, 550, 595
BciVI	GTATCC	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	139, 551
BfaI	CTAG	2 cut(s)	170, 347
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	139, 551
Bme18I	GGWCC	2 cut(s)	218, 559
BmgT120I	GGNCC	3 cut(s)	218, 527, 559
BmrFI	CCNGG	2 cut(s)	139, 551
BpuEI	CTTGAG	2 cut(s)	168, 172
BpuMI	CCSGG	2 cut(s)	139, 551
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	511
BshFI	GGCC	1 cut(s)	529
BsiSI	CCGG	3 cut(s)	139, 550, 584
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmI	GAATGC	2 cut(s)	176, 412
BsnI	GGCC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	49, 570
BspANI	GGCC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	49, 570
BssT1I	CCWWGG	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	464
BstKTI	GATC	2 cut(s)	52, 573
BstMBI	GATC	2 cut(s)	49, 570
BstSCI	CCNGG	2 cut(s)	137, 549
BstSFI	CTRYAG	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	570
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	218, 527, 559
CviJI	RGCY	3 cut(s)	142, 471, 529
CviKI_1	RGCY	3 cut(s)	142, 471, 529
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	51, 572
DpnII	GATC	2 cut(s)	49, 570
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	218, 559
EcoRI	GAATTC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	9 cut(s)	10, 101, 190, 192, 237, 239, 419, 482, 610
FokI	GGATG	1 cut(s)	451
FspBI	CTAG	2 cut(s)	170, 347
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	3 cut(s)	139, 550, 584
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	154, 244, 316, 494
HpaII	CCGG	3 cut(s)	139, 550, 584
HphI	GGTGA	2 cut(s)	325, 573
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188III	TCNNGA	7 cut(s)	44, 170, 292, 356, 366, 392, 453
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	49, 570
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	6 cut(s)	152, 366, 481, 492, 563, 597
MaeI	CTAG	2 cut(s)	170, 347
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	2 cut(s)	51, 572
MboI	GATC	2 cut(s)	49, 570
MboII	GAAGA	6 cut(s)	86, 274, 307, 468, 489, 580
MflI	RGATCY	1 cut(s)	570
MluCI	AATT	4 cut(s)	77, 266, 302, 459
MlyI	GAGTC	2 cut(s)	163, 253
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	192, 211, 231, 270, 334, 580
MspI	CCGG	3 cut(s)	139, 550, 584
MspR9I	CCNGG	2 cut(s)	139, 551
Mva1269I	GAATGC	2 cut(s)	176, 412
NciI	CCSGG	2 cut(s)	139, 551
NdeII	GATC	2 cut(s)	49, 570
NmuCI	GTSAC	1 cut(s)	579
PctI	GAATGC	2 cut(s)	176, 412
PfeI	GAWTC	2 cut(s)	316, 494
PleI	GAGTC	2 cut(s)	162, 252
PpsI	GAGTC	2 cut(s)	162, 252
PspPI	GGNCC	3 cut(s)	218, 527, 559
PsuI	RGATCY	1 cut(s)	570
Sau3AI	GATC	2 cut(s)	49, 570
Sau96I	GGNCC	3 cut(s)	218, 527, 559
SchI	GAGTC	2 cut(s)	163, 253
ScrFI	CCNGG	2 cut(s)	139, 551
SetI	ASST	7 cut(s)	62, 152, 223, 262, 329, 345, 378
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	218, 559
SmlI	CTYRAG	2 cut(s)	151, 183
SmoI	CTYRAG	2 cut(s)	151, 183
Sse9I	AATT	4 cut(s)	77, 266, 302, 459
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	2 cut(s)	170, 347
StyD4I	CCNGG	2 cut(s)	137, 549
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	293
TaqII	GACCGA	2 cut(s)	427, 576
TasI	AATT	4 cut(s)	77, 266, 302, 459
TfiI	GAWTC	2 cut(s)	316, 494
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	579
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	2 cut(s)	489, 597
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	218, 559
XapI	RAATTY	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	169
XspI	CTAG	2 cut(s)	170, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.