Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

62576560 .. 62578825

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGAGAACTTGGTTGGGATAGATTCAAGAGTAGAAGCAGTTAATTTGCTTTCAGGTGTTGGGGTGAATGATGCTCACTTTATAGGGATAACGGGAATGGGTGGAATTGGTAAGACAACTATTACCAAAGTTGTCACGCCCCGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

49

Amino Acids

5.05

Weight (kDa)

6.52

Isoelectric Point (pI)

-0.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	76
BmsI	GCATC	1 cut(s)	61
FaiI	YATR	1 cut(s)	83
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	27
LpnPI	CCDG	1 cut(s)	39
LweI	GCATC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	133
MluCI	AATT	3 cut(s)	43, 105, 144
MseI	TTAA	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	42
SetI	ASST	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	61
SgeI	CNNG	4 cut(s)	22, 39, 66, 105
Sse9I	AATT	3 cut(s)	43, 105, 144
TasI	AATT	3 cut(s)	43, 105, 144
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.