Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65447559 .. 65455533

Gene Structure 7975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATCTATGGAAGCGATACTATGAAAATGGGAGGCCTGATTTTGGTGTCAATTTGGGGTTGGATGATAAGGATTATGGTGTTCTTTGTGGAGAGGAACTTCATCTTGAGGAAGGAGGCTCTCCCACAACGACACCTTCGGGTGTCAATGATGTCAAAGACAACATGCCAGAGCAGTCACTGGAGCCTTTTCGGAGTGTGGCTCACTCGAGGCTCGAACAAGTCTGCCAAAAGAAGGATACAACGGGGAGCCGGAAGTGCTTGCTTGGCCCGAGACATAGACATTGGATGAGTTGGAGGGCTTATGTTCGCGAGCACGATAGGTTCTCTTTGGTTTATGATTTTGTGCCCAATGGGAGCCTGGAGGATGCTATGAACGAGTTAGGGAGAATCGGTTGCAGTTCGGTTGGGAGATTAGGGGTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007275 GO:0007389 GO:0008047 GO:0008150 GO:0008289 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010087 GO:0012505 GO:0016020 GO:0016192 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030234 GO:0030695 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0035091 GO:0042221 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098657 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH Pkinase

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

5.94

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	44, 235
AjnI	CCWGG	1 cut(s)	360
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	208, 271
AoxI	GGCC	2 cut(s)	35, 268
AspS9I	GGNCC	1 cut(s)	269
AvaI	CYCGRG	2 cut(s)	208, 271
BaeGI	GKGCMC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	2 cut(s)	208, 271
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	186, 251, 359
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	358
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	2 cut(s)	203, 383
BpuEI	CTTGAG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 235
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	3 cut(s)	70, 294, 373
BseLI	CCNNNNNNNGG	2 cut(s)	44, 235
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	37, 270
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	2 cut(s)	208, 271
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	44, 235
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	37, 270
BsoBI	CYCGRG	2 cut(s)	208, 271
Bsp1286I	GDGCHC	2 cut(s)	318, 351
Bsp68I	TCGCGA	1 cut(s)	312
BspANI	GGCC	2 cut(s)	37, 270
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	186, 251, 359
BsrI	ACTGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	263, 314
BstF5I	GGATG	3 cut(s)	70, 294, 373
BstFNI	CGCG	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 267
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	37, 270
BtsCI	GGATG	3 cut(s)	70, 294, 373
BtsIMutI	CAGTG	1 cut(s)	179
BtuMI	TCGCGA	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	263, 314
CaiI	CAGNNNCTG	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	208, 271
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	169
FaiI	YATR	8 cut(s)	10, 24, 78, 167, 279, 306, 339, 374
FatI	CATG	1 cut(s)	165
FokI	GGATG	3 cut(s)	77, 301, 380
GsuI	CTGGAG	2 cut(s)	203, 383
HaeIII	GGCC	2 cut(s)	37, 270
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	2 cut(s)	4, 390
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	107, 311
HpyAV	CCTTC	3 cut(s)	107, 147, 229
HpyCH4V	TGCA	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 267
Hsp92II	CATG	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	184, 249, 357
LpnPI	CCDG	6 cut(s)	51, 167, 183, 266, 347, 374
LweI	GCATC	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	318, 351
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	42, 275
MnlI	CCTC	7 cut(s)	27, 88, 103, 110, 204, 291, 358
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	258, 267
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	3 cut(s)	186, 251, 359
NmuCI	GTSAC	1 cut(s)	177
NruI	TCGCGA	1 cut(s)	312
NspI	RCATGY	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	4, 390
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	186, 251, 359
PspPI	GGNCC	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	181
RruI	TCGCGA	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	318, 351
SetI	ASST	2 cut(s)	139, 326
SfaNI	GCATC	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	107, 208
SmoI	CTYRAG	2 cut(s)	107, 208
Sse9I	AATT	1 cut(s)	52
SseBI	AGGCCT	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	360
TaqI	TCGA	2 cut(s)	209, 216
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	4, 390
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	4 cut(s)	17, 39, 92, 389
TspRI	CASTG	1 cut(s)	186
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.