Rroxscaffold_2G00132020

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Reverse (-)
68965134 .. 68967351
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132020.1

Sequence Viewer

Length: 672 bp
ATGTCGGTCCTCCCACAGGTCTCCTCTAGTAGCTGCCGCCAGTTGGAATGCATTACAATGTATACGGGATTGGCAGTTACATTACTTTTTCTCTTTGAAAGGTGGAAGGAATCTATAGTGCACGGGGATATGAAATCAACCAATATCCAATTAGATTCAAGTTGTAACTTGAAGTTCATGCCAAATGGGATCCTTGATTCTTACCTCTTTGGGAGGTGGTCTCCATTAAGGGCATGCACTTTGAGACACAAGGTATCTATGGGATTGACCTTCATATTGCTTTGTCTCTTTCAATGCAGCTGGAAGCAGTTTGTTGTGGACCGGAATACCGAGTCAATCGAGGACGTGGACATTGAGTTGATATATTGTGACTGTCGGATGGTCTTTGCTACATGGAACATCATGTTCATTCCAAAAGGAAGCCTTGGTGCTAATAACCTCTTTGGGGAGTATCGTCATCTTACATGCATGATCTTTGTGGGATTGAACTATGCATGGAAAAGTAACGTCAACAATCTCCCGCCAACATCACCACCTAAGTCAATGCACTTGGGTACCCTTCGATCGGGGATGAACCGTACAATGCACCAAGCCGTTCCTCGGAAATCGAAATGCCAGCATCACCTCGTGGACCTCTGTCATCGCTCCAAGAACTTGTGCTTCCATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

223

Amino Acids

25.65

Weight (kDa)

9.05

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 62
AciI CCGC 2 cut(s) 37, 521
AclWI GGATC 2 cut(s) 184, 197
AdeI CACNNNGTG 1 cut(s) 628
AfaI GTAC 2 cut(s) 556, 580
AfiI CCNNNNNNNGG 5 cut(s) 16, 43, 445, 565, 600
AgsI TTSAA 5 cut(s) 98, 159, 172, 293, 487
AjiI CACGTC 1 cut(s) 346
AluBI AGCT 2 cut(s) 33, 300
AluI AGCT 2 cut(s) 33, 300
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 4 cut(s) 25, 225, 238, 290
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 184, 197
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 33, 297
Asp718I GGTACC 1 cut(s) 554
AspS9I GGNCC 3 cut(s) 7, 319, 631
AsuHPI GGTGA 2 cut(s) 522, 614
AvaII GGWCC 3 cut(s) 7, 319, 631
BaeGI GKGCMC 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BamHI GGATCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 20, 309
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 578
BcoDI GTCTC 4 cut(s) 25, 225, 238, 290
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 34, 37, 298
BlsI GCNGC 3 cut(s) 35, 38, 299
Bme18I GGWCC 3 cut(s) 7, 319, 631
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 7, 319, 631
BmiI GGNNCC 2 cut(s) 191, 556
BmsI GCATC 1 cut(s) 628
BoxI GACNNNNGTC 1 cut(s) 636
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BsaI GGTCTC 2 cut(s) 25, 225
BsaJI CCNNGG 2 cut(s) 424, 599
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 43, 445, 565, 600
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 424, 599
BseGI GGATG 2 cut(s) 384, 576
BseLI CCNNNNNNNGG 5 cut(s) 16, 43, 445, 565, 600
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 20, 309
Bsh1285I CGRYCG 1 cut(s) 566
BshNI GGYRCC 1 cut(s) 554
BsiEI CGRYCG 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 5 cut(s) 16, 43, 445, 565, 600
BsmAI GTCTC 4 cut(s) 25, 225, 238, 290
BsmI GAATGC 1 cut(s) 53
Bso31I GGTCTC 2 cut(s) 25, 225
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 189, 471, 563
BspACI CCGC 2 cut(s) 37, 521
BspLI GGNNCC 2 cut(s) 191, 556
BspPI GGATC 2 cut(s) 184, 197
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 2 cut(s) 25, 225
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 424, 599
BssMI GATC 3 cut(s) 189, 471, 563
BssNAI GTATAC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 424
Bst1107I GTATAC 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 626
Bst4CI ACNGT 2 cut(s) 374, 578
BstC8I GCNNGC 2 cut(s) 235, 617
BstDEI CTNAG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 384, 576
BstKTI GATC 3 cut(s) 192, 474, 566
BstMAI GTCTC 4 cut(s) 25, 225, 238, 290
BstMBI GATC 3 cut(s) 189, 471, 563
BstMCI CGRYCG 1 cut(s) 566
BstMWI GCNNNNNNNGC 1 cut(s) 666
BstNSI RCATGY 2 cut(s) 237, 468
BstPAI GACNNNNGTC 1 cut(s) 636
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 20, 309
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BstZ17I GTATAC 1 cut(s) 63
BtgZI GCGATG 2 cut(s) 626, 650
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 384, 576
Cac8I GCNNGC 2 cut(s) 235, 617
Cfr13I GGNCC 3 cut(s) 7, 319, 631
Csp6I GTAC 2 cut(s) 555, 579
CviAII CATG 7 cut(s) 178, 234, 393, 403, 465, 469, 495
CviJI RGCY 4 cut(s) 33, 300, 423, 593
CviKI_1 RGCY 4 cut(s) 33, 300, 423, 593
CviQI GTAC 2 cut(s) 555, 579
DdeI CTNAG 1 cut(s) 537
DpnI GATC 3 cut(s) 191, 473, 565
DpnII GATC 3 cut(s) 189, 471, 563
DraIII CACNNNGTG 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 424
Eco31I GGTCTC 2 cut(s) 25, 225
Eco47I GGWCC 3 cut(s) 7, 319, 631
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 424
EcoT22I ATGCAT 3 cut(s) 53, 470, 496
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 7 cut(s) 181, 237, 396, 406, 468, 472, 498
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 7 cut(s) 177, 233, 392, 402, 464, 468, 494
FauI CCCGC 1 cut(s) 528
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 34, 37, 298
FokI GGATG 2 cut(s) 391, 583
Fsp4HI GCNGC 3 cut(s) 34, 37, 298
FspBI CTAG 1 cut(s) 27
GluI GCNGC 3 cut(s) 34, 37, 298
HapII CCGG 1 cut(s) 322
Hin1II CATG 7 cut(s) 181, 237, 396, 406, 468, 472, 498
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 4 cut(s) 110, 155, 197, 332
HpaII CCGG 1 cut(s) 322
HphI GGTGA 2 cut(s) 522, 614
Hpy166II GTNNAC 6 cut(s) 63, 121, 319, 349, 511, 631
Hpy188I TCNGA 2 cut(s) 378, 603
Hpy8I GTNNAC 6 cut(s) 63, 121, 319, 349, 511, 631
HpyAV CCTTC 3 cut(s) 100, 280, 569
HpyCH4III ACNGT 2 cut(s) 374, 578
HpyCH4IV ACGT 2 cut(s) 345, 507
HpyCH4V TGCA 8 cut(s) 51, 121, 237, 297, 468, 494, 547, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 666
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 2 cut(s) 345, 507
Hsp92II CATG 7 cut(s) 181, 237, 396, 406, 468, 472, 498
KpnI GGTACC 1 cut(s) 558
Kzo9I GATC 3 cut(s) 189, 471, 563
LmnI GCTCC 1 cut(s) 650
LpnPI CCDG 5 cut(s) 2, 53, 286, 335, 629
Lsp1109I GCAGC 2 cut(s) 20, 309
LweI GCATC 1 cut(s) 628
MaeI CTAG 1 cut(s) 27
MaeII ACGT 2 cut(s) 345, 507
MaeIII GTNAC 4 cut(s) 76, 164, 368, 503
MalI GATC 3 cut(s) 191, 473, 565
MboI GATC 3 cut(s) 189, 471, 563
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 24, 356
MnlI CCTC 9 cut(s) 20, 34, 207, 215, 334, 449, 609, 635, 644
Mph1103I ATGCAT 3 cut(s) 53, 470, 496
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 666
NdeII GATC 3 cut(s) 189, 471, 563
NlaIII CATG 7 cut(s) 181, 237, 396, 406, 468, 472, 498
NlaIV GGNNCC 2 cut(s) 191, 556
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 3 cut(s) 53, 470, 496
NspI RCATGY 2 cut(s) 237, 468
PaeI GCATGC 1 cut(s) 237
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 110, 155, 197
PkrI GCNGC 3 cut(s) 35, 38, 299
Ple19I CGATCG 1 cut(s) 566
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PshAI GACNNNNGTC 1 cut(s) 636
PspN4I GGNNCC 2 cut(s) 191, 556
PspPI GGNCC 3 cut(s) 7, 319, 631
PsuI RGATCY 1 cut(s) 189
PvuI CGATCG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 556, 580
RsaNI GTAC 2 cut(s) 555, 579
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 3 cut(s) 34, 37, 298
Sau3AI GATC 3 cut(s) 189, 471, 563
Sau96I GGNCC 3 cut(s) 7, 319, 631
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 3 cut(s) 7, 319, 631
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 237
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 37, 521
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 374, 578
TaiI ACGT 2 cut(s) 348, 510
TaqI TCGA 3 cut(s) 339, 562, 608
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 3 cut(s) 110, 155, 197
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 33, 297
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 5 cut(s) 146, 166, 262, 397, 587
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 7, 319, 631
XagI CCTNNNNNAGG 1 cut(s) 14
XceI RCATGY 2 cut(s) 237, 468
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 3 cut(s) 53, 470, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.