Rroxscaffold_2G00132260

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Forward (+)
69293957 .. 69294560
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132260.1

Sequence Viewer

Length: 408 bp
ATGATTTGCTTGATCCAACAGGCATGGATTCAATTCTTTCAAAAGTTGTCGAGTACGTACTATGCGGACTCCGACGCCTACTCCGAATGCGTGAGGGAGACGGAGCACAAGCAGTACAAGTACATTCTTCTCCAGAGCATTCTTTTCTACCTGAGGGGGTGTATCCACCGGAGAATCGTACCAGGGTTTCCATCAAGGACAAAAACTGTGAGGCAAATCATGTATGAACTGAAGAATTCTAATGCTCACAGGATCATGGTGTATGGAGTTGGAGGTAGTGGGATACTAGACACGAAGATTCTTGTACTTCTGGATGATGTTTGGGAACAAATTGACTTGGATGCTCTGGGACTTCCTAGTGTCCCTAGTTGCAAGATATTTCTAACATCTGGAAGTAAAGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.49

Weight (kDa)

8.34

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AclWI GGATC 2 cut(s) 7, 260
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 6 cut(s) 55, 59, 116, 122, 180, 306
AgsI TTSAA 2 cut(s) 32, 41
AjnI CCWGG 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 7, 260
ApoI RAATTY 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 2 cut(s) 173, 276
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 3 cut(s) 287, 357, 366
BfuI GTATCC 2 cut(s) 173, 276
Bme1390I CCNGG 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bse21I CCTNAGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 319, 346
BseMII CTCAG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 347, 363
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 347, 363
BsmI GAATGC 2 cut(s) 92, 138
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 12, 252
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 144
BspPI GGATC 2 cut(s) 7, 260
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 12, 252
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 319, 346
BstKTI GATC 2 cut(s) 15, 255
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 12, 252
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSNI TACGTA 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 152
BsuI GTATCC 2 cut(s) 173, 276
BtsCI GGATG 2 cut(s) 319, 346
CseI GACGC 1 cut(s) 83
Csp6I GTAC 6 cut(s) 54, 58, 115, 121, 179, 305
CviAII CATG 3 cut(s) 24, 220, 256
CviQI GTAC 6 cut(s) 54, 58, 115, 121, 179, 305
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 14, 254
DpnII GATC 2 cut(s) 12, 252
Eco105I TACGTA 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 3 cut(s) 27, 223, 259
FaiI YATR 7 cut(s) 25, 63, 221, 225, 257, 264, 406
FaqI GGGAC 2 cut(s) 347, 363
FatI CATG 3 cut(s) 23, 219, 255
FokI GGATG 2 cut(s) 326, 353
FspBI CTAG 3 cut(s) 287, 357, 366
GsuI CTGGAG 1 cut(s) 116
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 27, 223, 259
HinfI GANTC 4 cut(s) 28, 68, 174, 298
HpaII CCGG 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 73, 85
Hpy188III TCNNGA 3 cut(s) 133, 311, 390
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 372
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 27, 223, 259
Kzo9I GATC 2 cut(s) 12, 252
LmnI GCTCC 1 cut(s) 103
LweI GCATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 287, 357, 366
MaeII ACGT 1 cut(s) 56
MalI GATC 2 cut(s) 14, 254
MboI GATC 2 cut(s) 12, 252
MboII GAAGA 3 cut(s) 119, 244, 307
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 32, 235, 330
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 3 cut(s) 40, 96, 250
MnlI CCTC 4 cut(s) 87, 147, 204, 266
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 2 cut(s) 92, 138
MvaI CCWGG 1 cut(s) 183
NdeII GATC 2 cut(s) 12, 252
NlaIII CATG 3 cut(s) 27, 223, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 2 cut(s) 92, 138
PfeI GAWTC 3 cut(s) 28, 174, 298
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Ppu21I YACGTR 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
RsaI GTAC 6 cut(s) 55, 59, 116, 122, 180, 306
RsaNI GTAC 6 cut(s) 54, 58, 115, 121, 179, 305
Sau3AI GATC 2 cut(s) 12, 252
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 59, 153, 277
SfaNI GCATC 1 cut(s) 331
SnaBI TACGTA 1 cut(s) 57
Sse9I AATT 3 cut(s) 32, 235, 330
SsiI CCGC 1 cut(s) 65
SspMI CTAG 3 cut(s) 287, 357, 366
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 32, 235, 330
TatI WGTACW 3 cut(s) 114, 120, 304
TfiI GAWTC 3 cut(s) 28, 174, 298
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 116
XapI RAATTY 1 cut(s) 235
XspI CTAG 3 cut(s) 287, 357, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.