Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

72839967 .. 72842058

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGAATAACAGCTACAAAAGATGAGGAGGATAATGAATTGGAATATGGAGTGCCATCTTCTCACACCCTAAATACAGTTTGCTTCTCTCGATACCTTTTGCATTACATCCTATCTTATGCTCAGAATGAGGGTGTCTCTGAAAAATTTGGGTTTAGACATTGTATCTGGGGTCCAGCAAAAACATACCATCTAATTAAGCTTCAATTTTGCTCTTGCAATTCTTATCCAACTCCTGAGTTTACAACTCCAAGTTTTCAGTACCACACAGCGTTTAATGGTGTTGCATTAGGCATTGTATCTGGGGTCCAGCAAACATACCACCAGTTTCACCATGAAGCCATTCCACCCCCATTCGCAATCCTCGCCGTCGCTAAAGTCGGCGGCATCCACGCCAACAACACCTACCCTACCGACTTCATTACCCTCAACCTCCAAATCCGGACCAACGTCATCGACGACTCGCACCTTTCGGAGTCAACAAGCTCCTCTTCCTTGGCTCCTCTTGCATTTACACCAATCCTAGAGAAAAGAGGCCGATGCTCGCTTTTCATCGAGTCAACCGCCTTCATGGACCGCGAACCCTCCCTTAAGTCCCTCCTCTCCCGCCTCGACCTCTCCGCCAACCCCAACTCCCGATCCCCGCCGAACTCGCTTCTCCCGTCATCCTCCGCCGCCGCCGCCAACCTAACCCATCCTCTTCAATTTCTTAGCATCCAACCACCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

243

Amino Acids

26.86

Weight (kDa)

6.4

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	579
AccIII	TCCGGA	1 cut(s)	441
AclWI	GGATC	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	263
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	206, 704
AluBI	AGCT	4 cut(s)	14, 202, 486, 729
AluI	AGCT	4 cut(s)	14, 202, 486, 729
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	4 cut(s)	173, 307, 444, 574
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	4 cut(s)	173, 307, 444, 574
BccI	CCATC	3 cut(s)	64, 198, 702
BceAI	ACGGC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	524, 730
BfrI	CTTAAG	1 cut(s)	590
BisI	GCNGC	4 cut(s)	385, 675, 678, 681
BlsI	GCNGC	4 cut(s)	386, 676, 679, 682
Bme18I	GGWCC	4 cut(s)	173, 307, 444, 574
BmgT120I	GGNCC	4 cut(s)	173, 307, 444, 574
BmiI	GGNNCC	3 cut(s)	174, 308, 501
BmsI	GCATC	3 cut(s)	396, 530, 723
BoxI	GACNNNNGTC	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bse1I	ACTGG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	5 cut(s)	108, 387, 665, 694, 714
BseMII	CTCAG	2 cut(s)	137, 228
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	4 cut(s)	41, 478, 492, 590
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	638
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	2 cut(s)	136, 229
BspEI	TCCGGA	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	174, 308, 501
BspPI	GGATC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	496, 705
BstAFI	CTTAAG	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	123, 237, 710
BstF5I	GGATG	5 cut(s)	108, 387, 665, 694, 714
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	1 cut(s)	641
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	638
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 506, 652, 680
BstPAI	GACNNNNGTC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	5 cut(s)	108, 387, 665, 694, 714
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	4 cut(s)	173, 307, 444, 574
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	335, 571
CviJI	RGCY	7 cut(s)	14, 202, 341, 486, 500, 537, 729
CviKI_1	RGCY	7 cut(s)	14, 202, 341, 486, 500, 537, 729
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	123, 237, 710
DpnI	GATC	1 cut(s)	640
DpnII	GATC	1 cut(s)	638
Eam1104I	CTCTTC	2 cut(s)	496, 705
EarI	CTCTTC	2 cut(s)	496, 705
EciI	GGCGGA	2 cut(s)	610, 661
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	4 cut(s)	173, 307, 444, 574
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	338, 574
FaiI	YATR	6 cut(s)	48, 120, 187, 319, 336, 572
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	2 cut(s)	334, 570
FauI	CCCGC	2 cut(s)	614, 651
Fnu4HI	GCNGC	4 cut(s)	385, 675, 678, 681
FokI	GGATG	5 cut(s)	95, 374, 652, 681, 701
Fsp4HI	GCNGC	4 cut(s)	385, 675, 678, 681
FspBI	CTAG	2 cut(s)	524, 730
GluI	GCNGC	4 cut(s)	385, 675, 678, 681
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	2 cut(s)	338, 574
HincII	GTYRAC	2 cut(s)	480, 561
HindII	GTYRAC	2 cut(s)	480, 561
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	461, 476, 557
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	3 cut(s)	243, 480, 561
Hpy188I	TCNGA	3 cut(s)	126, 142, 475
Hpy188III	TCNNGA	4 cut(s)	90, 236, 442, 636
Hpy8I	GTNNAC	3 cut(s)	243, 480, 561
Hpy99I	CGWCG	2 cut(s)	374, 461
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	103, 219, 287, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 506, 652, 680
HpyF3I	CTNAG	3 cut(s)	123, 237, 710
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	338, 574
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	638
LmnI	GCTCC	2 cut(s)	491, 505
LpnPI	CCDG	7 cut(s)	154, 189, 249, 288, 323, 338, 455
LweI	GCATC	3 cut(s)	396, 530, 723
MaeI	CTAG	2 cut(s)	524, 730
MaeII	ACGT	1 cut(s)	450
MalI	GATC	1 cut(s)	640
MboI	GATC	1 cut(s)	638
MboII	GAAGA	3 cut(s)	51, 483, 692
MluCI	AATT	6 cut(s)	38, 146, 195, 206, 220, 704
MlyI	GAGTC	3 cut(s)	455, 485, 566
MmeI	TCCRAC	1 cut(s)	254
MroI	TCCGGA	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	198, 276, 591
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	365, 506, 652, 680
NdeII	GATC	1 cut(s)	638
NlaIII	CATG	2 cut(s)	338, 574
NlaIV	GGNNCC	3 cut(s)	174, 308, 501
PcsI	WCGNNNNNNNCGW	2 cut(s)	456, 659
PdmI	GAANNNNTTC	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	386, 676, 679, 682
PleI	GAGTC	3 cut(s)	455, 484, 565
PpsI	GAGTC	3 cut(s)	455, 484, 565
PshAI	GACNNNNGTC	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	174, 308, 501
PspPI	GGNCC	4 cut(s)	173, 307, 444, 574
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	198, 276, 591
SatI	GCNGC	4 cut(s)	385, 675, 678, 681
Sau3AI	GATC	1 cut(s)	638
Sau96I	GGNCC	4 cut(s)	173, 307, 444, 574
SchI	GAGTC	3 cut(s)	455, 485, 566
SfaNI	GCATC	3 cut(s)	396, 530, 723
SinI	GGWCC	4 cut(s)	173, 307, 444, 574
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	38, 146, 195, 206, 220, 704
SspMI	CTAG	2 cut(s)	524, 730
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	91, 456, 555, 612
TasI	AATT	6 cut(s)	38, 146, 195, 206, 220, 704
TauI	GCSGC	4 cut(s)	387, 677, 680, 683
Tru1I	TTAA	3 cut(s)	198, 276, 591
Tru9I	TTAA	3 cut(s)	198, 276, 591
TspDTI	ATGAA	5 cut(s)	51, 351, 409, 541, 559
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	4 cut(s)	173, 307, 444, 574
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	524, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.