Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

77701170 .. 77707059

Gene Structure 5890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCTAGCGGCTTTAATACAAAAATGCACCGCCATAAACTCGCCGCCTAACCACCACAACCGTCGGCTCGCGCTCTGTGTTCCTATACAACAATGTGCTATCCATGTATGCACGGTGAGGCTCGCTCGGAGATGCACACCAGCTATTCGACGAAATGCCTCAAAGAAGTCTTGTTTCGTTCAATGCGCCGCAGCGACCTATCCTAGGAGTTTGAACGCCGCCGATTTGGCATTGACATTGCTAAAACAAATGGGAGGGGAATGTCTCGGGCAGCCAAATGTTTCGACTTTCACGAGTGTGATACAAGCCTCATGTACACTTGAGGATTGGTTGGTTGGCTCTTTGGTTCATGCACAAGTTGTGAAATCGGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

141

Amino Acids

15.05

Weight (kDa)

9.15

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	56, 78, 92, 237, 267
AclWI	GGATC	2 cut(s)	12, 33
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	18, 230, 262
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	12, 33
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	239, 319
AspA2I	CCTAGG	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	121, 236
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	314
AvrII	CCTAGG	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	251, 331
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	53, 252
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	6 cut(s)	57, 92, 237, 240, 267, 320
BlnI	CCTAGG	1 cut(s)	251
BlsI	GCNGC	6 cut(s)	58, 93, 238, 241, 268, 321
BmeT110I	CYCGRG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	251, 331
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	4, 25
BspACI	CCGC	5 cut(s)	56, 78, 92, 237, 267
BspANI	GGCC	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 33
BsrDI	GCAATG	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	4, 25
BssSI	CACGAG	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	110, 163
BstAUI	TGTACA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	117, 171
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	121, 236
BstKTI	GATC	2 cut(s)	7, 28
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	4, 25
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	251, 331
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	117, 171
CfoI	GCGC	2 cut(s)	121, 236
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	4 cut(s)	29, 152, 360, 398
CviJI	RGCY	8 cut(s)	38, 59, 115, 169, 191, 322, 356, 387
CviKI_1	RGCY	8 cut(s)	38, 59, 115, 169, 191, 322, 356, 387
CviQI	GTAC	1 cut(s)	363
DpnI	GATC	2 cut(s)	6, 27
DpnII	GATC	2 cut(s)	4, 25
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	4 cut(s)	32, 155, 363, 401
FaiI	YATR	8 cut(s)	30, 41, 83, 134, 153, 157, 361, 399
FatI	CATG	4 cut(s)	28, 151, 359, 397
Fnu4HI	GCNGC	6 cut(s)	57, 92, 237, 240, 267, 320
Fsp4HI	GCNGC	6 cut(s)	57, 92, 237, 240, 267, 320
FspBI	CTAG	2 cut(s)	53, 252
GlaI	GCGC	2 cut(s)	120, 235
GluI	GCNGC	6 cut(s)	57, 92, 237, 240, 267, 320
HaeIII	GGCC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	121, 236
Hin1II	CATG	4 cut(s)	32, 155, 363, 401
Hin6I	GCGC	2 cut(s)	119, 234
HinP1I	GCGC	2 cut(s)	119, 234
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	48, 365
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	340, 423
Hpy8I	GTNNAC	2 cut(s)	48, 365
Hpy99I	CGWCG	3 cut(s)	13, 114, 201
HpyCH4III	ACNGT	2 cut(s)	110, 163
HpyCH4V	TGCA	4 cut(s)	75, 159, 183, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	32, 155, 363, 401
HspAI	GCGC	2 cut(s)	119, 234
Kzo9I	GATC	2 cut(s)	4, 25
LpnPI	CCDG	1 cut(s)	201
Lsp1109I	GCAGC	2 cut(s)	251, 331
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	53, 252
MalI	GATC	2 cut(s)	6, 27
MboI	GATC	2 cut(s)	4, 25
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	5 cut(s)	159, 217, 296, 364, 367
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	4, 25
NlaIII	CATG	4 cut(s)	32, 155, 363, 401
NlaIV	GGNNCC	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PkrI	GCNGC	6 cut(s)	58, 93, 238, 241, 268, 321
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	6 cut(s)	57, 92, 237, 240, 267, 320
Sau3AI	GATC	2 cut(s)	4, 25
SetI	ASST	2 cut(s)	193, 248
SfaNI	GCATC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	5 cut(s)	56, 78, 92, 237, 267
SspMI	CTAG	2 cut(s)	53, 252
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	110, 163
TaqI	TCGA	3 cut(s)	11, 196, 332
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	4 cut(s)	59, 94, 239, 269
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TseI	GCWGC	2 cut(s)	239, 319
TspDTI	ATGAA	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	250
XmaJI	CCTAGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	53, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.