Rroxscaffold_2G00140220

LYK5-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
N/A
Physical Location & Seq
Forward (+)
78453274 .. 78453626
353 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00140220.1

Sequence Viewer

Length: 306 bp
ATGGCTAGACCTGCTACAAATGCTATGACGCCAAAAGTGGTGTTTTTGCATTTGGAGTCATATTCTGTTGGAGTTGCTTTCAGGAAAGAGAGGCGTGGCAATAAAAGACGGATGAAGATAAGAAATTTGGAGAGATTAAGACAATGGATGGACCCAAAATTGGAGGACTTATATCCCCTTGATGGCGTGTTGAGTATGGCAAACTTGGCAATAACATGCACTCAGGAAGAGGCTTCTGTAAGGCCAACAATGGCAGAAGCAGTCTTCAACATCTCTATACTTGCTCAGTCGATTCCAAATAATTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

9.89

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 160, 182
AgsI TTSAA 1 cut(s) 268
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 256
BccI CCATC 2 cut(s) 142, 176
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 182
BseGI GGATG 2 cut(s) 117, 153
BseLI CCNNNNNNNGG 2 cut(s) 160, 182
BseMII CTCAG 2 cut(s) 236, 299
BshFI GGCC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 160, 182
BsnI GGCC 1 cut(s) 244
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 235, 298
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 222, 285
BstF5I GGATG 2 cut(s) 117, 153
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 206
BstNSI RCATGY 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 117, 153
BveI ACCTGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 37
CviAII CATG 1 cut(s) 216
CviJI RGCY 3 cut(s) 5, 233, 244
CviKI_1 RGCY 3 cut(s) 5, 233, 244
DdeI CTNAG 2 cut(s) 222, 285
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 151
FaeI CATG 1 cut(s) 219
FaiI YATR 6 cut(s) 26, 61, 172, 197, 217, 278
FatI CATG 1 cut(s) 215
FokI GGATG 2 cut(s) 124, 160
FspBI CTAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 244
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 219
HinfI GANTC 2 cut(s) 56, 292
Hpy188III TCNNGA 2 cut(s) 82, 224
HpyCH4V TGCA 2 cut(s) 49, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 206
HpyF3I CTNAG 2 cut(s) 222, 285
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 219
LpnPI CCDG 3 cut(s) 24, 67, 209
MaeI CTAG 1 cut(s) 6
MboII GAAGA 3 cut(s) 127, 239, 256
MluCI AATT 3 cut(s) 124, 158, 301
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 84, 157, 223
MseI TTAA 2 cut(s) 137, 304
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 206
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 219
PfeI GAWTC 1 cut(s) 292
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 137, 304
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 65
SetI ASST 1 cut(s) 13
SinI GGWCC 1 cut(s) 151
Sse9I AATT 3 cut(s) 124, 158, 301
SspMI CTAG 1 cut(s) 6
TaqI TCGA 1 cut(s) 290
TasI AATT 3 cut(s) 124, 158, 301
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 137, 304
Tru9I TTAA 2 cut(s) 137, 304
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 124
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.