Rroxscaffold_3G00219460

Cyclic nucleotide-monophosphate binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
1573099 .. 1576571
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219460.1

Sequence Viewer

Length: 507 bp
ATGAGAGCGTCGAGATCTTCGAATACATGGAAGCTTATCATGAATTTCTTTGTCTTGATGCAATATGTTCCGCGAGTGTGTCGTATTTACCTCTTGATGGGTAAGGAACCAAAGAGGACCATTAAGGGAGAGACTGCGATATGGGTTAAAGGTACATATATGCAGTTGGACACTGCAAGAGTAGAGGAGCGTAGGCACAAGGTGAAAATGGAGCGGAAGCTGGAAGAGAAAGATCGAGAGATAGGATTGTGGTTGGCTAAAAACGGCGTACCTGAAAGGTGGAGAATTGATATAAAGGAGCAGGTGATGAAAAAAGTTCAACAAGAACTCGATGAAAATAGGGGCGCTGATTTGGACAAGAATATCCTTCCTATTCTTCCCTCCGAACTTGAAAACTATATCAAAAGTTGCATGCCATTGACTAGACTTAAACAGAGGGAGAAGTCATCCTCCACCTTGCCGGCCTTCGGTGACCGGTGGCGGGCGCCGGCAACCGGTGACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

168

Amino Acids

19.88

Weight (kDa)

9.88

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 71, 214, 481
AcsI RAATTY 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 2 cut(s) 154, 270
AfiI CCNNNNNNNGG 5 cut(s) 97, 467, 481, 494, 501
AgeI ACCGGT 3 cut(s) 474, 494, 501
AgsI TTSAA 2 cut(s) 320, 392
AluBI AGCT 2 cut(s) 34, 220
AluI AGCT 2 cut(s) 34, 220
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 43
AsiGI ACCGGT 3 cut(s) 474, 494, 501
AspLEI GCGC 2 cut(s) 347, 487
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 214, 316, 482
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 484
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 423
BfoI RGCGCY 2 cut(s) 348, 488
BfuAI ACCTGC 1 cut(s) 292
BglII AGATCT 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 108, 486
BmsI GCATC 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 485
BsaWI WCCGGW 3 cut(s) 474, 494, 501
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 467, 481, 494, 501
Bse118I RCCGGY 5 cut(s) 460, 474, 487, 494, 501
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 5 cut(s) 97, 467, 481, 494, 501
BseRI GAGGAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 484
BshTI ACCGGT 3 cut(s) 474, 494, 501
BsiSI CCGG 5 cut(s) 461, 475, 488, 495, 502
BslI CCNNNNNNNGG 5 cut(s) 97, 467, 481, 494, 501
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 14, 232
BspACI CCGC 3 cut(s) 71, 214, 481
BspANI GGCC 1 cut(s) 464
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 108, 486
BspMI ACCTGC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 5 cut(s) 460, 474, 487, 494, 501
BssAI RCCGGY 5 cut(s) 460, 474, 487, 494, 501
BssMI GATC 2 cut(s) 14, 232
BssNI GRCGYC 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 413, 462, 483, 489
BstEII GGTNACC 2 cut(s) 470, 497
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 2 cut(s) 348, 488
BstHHI GCGC 2 cut(s) 347, 487
BstKTI GATC 2 cut(s) 17, 235
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 14, 232
BstNSI RCATGY 1 cut(s) 415
BstPI GGTNACC 2 cut(s) 470, 497
BstUI CGCG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 464
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 413, 462, 483, 489
CciI TCATGA 1 cut(s) 39
CfoI GCGC 2 cut(s) 347, 487
Cfr10I RCCGGY 5 cut(s) 460, 474, 487, 494, 501
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 153, 269
CspAI ACCGGT 3 cut(s) 474, 494, 501
CviAII CATG 3 cut(s) 27, 40, 412
CviJI RGCY 4 cut(s) 34, 220, 257, 464
CviKI_1 RGCY 4 cut(s) 34, 220, 257, 464
CviQI GTAC 2 cut(s) 153, 269
DinI GGCGCC 1 cut(s) 486
DpnI GATC 2 cut(s) 16, 234
DpnII GATC 2 cut(s) 14, 232
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 117
Eco91I GGTNACC 2 cut(s) 470, 497
EcoO65I GGTNACC 2 cut(s) 470, 497
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
FaeI CATG 3 cut(s) 30, 43, 415
FatI CATG 3 cut(s) 26, 39, 411
FauI CCCGC 1 cut(s) 474
FokI GGATG 1 cut(s) 433
FspBI CTAG 1 cut(s) 423
GlaI GCGC 2 cut(s) 346, 486
HaeII RGCGCY 2 cut(s) 348, 488
HaeIII GGCC 1 cut(s) 464
HapII CCGG 5 cut(s) 461, 475, 488, 495, 502
HhaI GCGC 2 cut(s) 347, 487
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 3 cut(s) 30, 43, 415
Hin6I GCGC 2 cut(s) 345, 485
HinP1I GCGC 2 cut(s) 345, 485
HindIII AAGCTT 1 cut(s) 32
HpaII CCGG 5 cut(s) 461, 475, 488, 495, 502
HphI GGTGA 3 cut(s) 214, 316, 482
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 5 cut(s) 12, 40, 55, 94, 236
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 377, 475
HpyCH4V TGCA 4 cut(s) 61, 163, 176, 411
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 3 cut(s) 30, 43, 415
HspAI GCGC 2 cut(s) 345, 485
KasI GGCGCC 1 cut(s) 484
KroI GCCGGC 2 cut(s) 460, 487
KroNI GCCGGC 2 cut(s) 462, 489
Kzo9I GATC 2 cut(s) 14, 232
LmnI GCTCC 3 cut(s) 187, 211, 298
LpnPI CCDG 6 cut(s) 206, 285, 287, 474, 488, 501
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 470, 497
MalI GATC 2 cut(s) 16, 234
MbiI CCGCTC 1 cut(s) 214
MboI GATC 2 cut(s) 14, 232
MboII GAAGA 3 cut(s) 9, 236, 368
MflI RGATCY 1 cut(s) 14
MluCI AATT 2 cut(s) 43, 285
Mly113I GGCGCC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 6 cut(s) 101, 108, 178, 391, 429, 460
MroNI GCCGGC 2 cut(s) 460, 487
MseI TTAA 3 cut(s) 123, 147, 429
MspI CCGG 5 cut(s) 461, 475, 488, 495, 502
MvnI CGCG 1 cut(s) 73
NaeI GCCGGC 2 cut(s) 462, 489
NarI GGCGCC 1 cut(s) 485
NdeII GATC 2 cut(s) 14, 232
NgoMIV GCCGGC 2 cut(s) 460, 487
NlaIII CATG 3 cut(s) 30, 43, 415
NlaIV GGNNCC 2 cut(s) 108, 486
NmuCI GTSAC 2 cut(s) 470, 497
NspI RCATGY 1 cut(s) 415
NspV TTCGAA 1 cut(s) 20
PaeI GCATGC 1 cut(s) 415
PagI TCATGA 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdiI GCCGGC 2 cut(s) 462, 489
PinAI ACCGGT 3 cut(s) 474, 494, 501
PluTI GGCGCC 1 cut(s) 488
PspEI GGTNACC 2 cut(s) 470, 497
PspN4I GGNNCC 2 cut(s) 108, 486
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 2 cut(s) 154, 270
RsaNI GTAC 2 cut(s) 153, 269
SaqAI TTAA 3 cut(s) 123, 147, 429
Sau3AI GATC 2 cut(s) 14, 232
Sau96I GGNCC 1 cut(s) 117
SetI ASST 9 cut(s) 36, 93, 154, 204, 222, 274, 281, 306, 458
SfaNI GCATC 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 117
SphI GCATGC 1 cut(s) 415
Sse9I AATT 2 cut(s) 43, 285
SsiI CCGC 3 cut(s) 71, 214, 481
SspDI GGCGCC 1 cut(s) 484
SspMI CTAG 1 cut(s) 423
TaqI TCGA 4 cut(s) 11, 20, 235, 330
TasI AATT 2 cut(s) 43, 285
Tru1I TTAA 3 cut(s) 123, 147, 429
Tru9I TTAA 3 cut(s) 123, 147, 429
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 470, 497
Tsp45I GTSAC 2 cut(s) 470, 497
TspDTI ATGAA 3 cut(s) 56, 323, 348
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 415
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.