Rroxscaffold_3G00221080

Receptor protein kinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
3746020 .. 3749580
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221080.1

Sequence Viewer

Length: 1674 bp
ATGAATAAACTCTTTGACACCATCCCACCCGAAATTAGCTACCTCTCCAAACTCATCTCTCTTGATCTCTCTCTTAATCAATTTTCCGGGAGAATCCCACCAGAAATTGGTTTCCTGAAAAATCTTAAAGTTCTCCTCCTCTTCAGAAATAACCTTTCTGACTCTATTCCTAAGGAGATAGGAAGCTTAAAATCAATTGTGGATCTAGAGTTGTCAAACAATCAACTAGATGGTTCAATTCCCTCTTCATTTGGTGATTTGAGCAGCTTAAAAACCTTGAACCTCAGTTACAACAACCTTTCTGGCTCTATTCCTAAAGAGATAGGGAAACTGAAATCTATTGTGTCTCTAACCTTGAGGAATAATCAACTGAACGGTTCAATTCCCACATCTCTTGGTGACTTGAGAAAATTGAAAATCTTATACCTCCGTCAGAATCAACTTTCTGGCACGATTCCTGAAGAGATAGGAAACTTGAAATCTCTTGTGCGTCTAGGGTTGAGCGTCAATCAGCTCAACGGTTCAGTTCCCAATTCATTTGGTAACTTACTCAAATTAAAAACTTTAAATCTCCGTCAGAACCAGCTTTCGGGATTCATCCCCCAACAAATGGAGAACCTCACCAAGTTGATTGAGCTCCATTTGGATACCAACCATTTCTCTGGTTATTTACCCCAAAATGTTTGCCAAGGGGGATCTCTCACAAACTTCAGCATAAACAAGAACCATTTCATAGGTCCGGTGCCAAAGAGCTTGAAAAATTGCACAAGCTTAATCAGAGTCCGCCTTGAAGAGAATCAATTAACTGGTAACATTTCTGAAGACTTTGGTGTCTATCCAAGTCTTACGTTCTTAAGGCTAAATGACAACAACTTCTATGGTGAAATTTCACATAATTGGGGACAATGTCCAAATCTGAAAGACCTAGGAATGGCAGGAAACAACCTAACTGGTAGCATACCACCTCAGATTTGCAATGCAACCAAGCTTCAGGAGCTCAATCTATCTTCAAATCGTTTAGTTGGGATGATTCCAAAGGAATTTGCAAGGTTGACTTCTTTGCTGGAGTTGAGGTTGAATGACAATCAACTTTCGGGTCCTATACCCTCAGAATTTGGATCACTTGTTGATCTTGATTATCTTGACCTATCCGCCAACAAATTCAATGACTCCATTCCTAAAATCCTAGGTGACTTGCTCCATTTACACTACTTGAATTTGAGCAATAATGAGTTCATTCAAGAAATTCCACTAGAGTTGGGGAATCTAGTTCACCTATCCACGCTAGATGTAAGTTATAACTCACTTAAAGGCAACATACCATCACAAATGAGCAATATGCAGAGCTTGGAAAATCTGAGTCTTTCCCACAATAATCTTTCTGGCCTCATTCCAATAACATTTGAAGACATGCACGGCTTGTGGTGTGTTGATATATCCAACAATGACTTCGAGGGTCCCCTTCCCAACACCACAGCATTTCAACATGCTCTCCCACAAGCATTACAAGGGAACAAGAGATTGTGCGGCCCCATTGGATCGTTTCCACCCTGCAAAAGTATCTCAAAGAAGGATCACAGACTGGTAACTTCAATCATAATCTCGCTTGTGGCGACACTTTTATTGCTATCTGTTACAATTGCTTGTGTAGTAGAAAGAAAAAAAGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

557

Amino Acids

61.43

Weight (kDa)

7.61

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 7 - 95 1.5e-06 Leucine-rich repeat region
LRR_8 PF13855 69 - 124 2.1e-09 Leucine rich repeat
LRR_14 PF23598 75 - 288 8.8e-16 Leucine-rich repeat region
LRR_8 PF13855 178 - 220 6.3e-06 Leucine rich repeat
LRR_8 PF13855 304 - 364 5.5e-07 Leucine rich repeat
LRR_8 PF13855 329 - 388 7.1e-10 Leucine rich repeat
LRR_14 PF23598 387 - 459 3.6e-10 Leucine-rich repeat region
LRR_8 PF13855 425 - 484 9.6e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1299
AasI GACNNNNNNGTC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 742
AccB7I CCANNNNNTGG 2 cut(s) 107, 610
AciI CCGC 3 cut(s) 784, 1152, 1527
AclWI GGATC 5 cut(s) 210, 703, 1126, 1546, 1581
AcsI RAATTY 6 cut(s) 885, 1040, 1112, 1160, 1216, 1245
AcuI CTGAAG 5 cut(s) 127, 480, 694, 840, 974
AfiI CCNNNNNNNGG 4 cut(s) 107, 589, 610, 931
AflII CTTAAG 1 cut(s) 853
AjuI GAANNNNNNNTTGG 2 cut(s) 1433, 1465
Alw21I GWGCWC 2 cut(s) 639, 999
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 5 cut(s) 210, 703, 1126, 1546, 1581
AoxI GGCC 2 cut(s) 1384, 1528
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 6 cut(s) 885, 1040, 1112, 1160, 1216, 1245
Asp700I GAANNNNTTC 1 cut(s) 728
AspA2I CCTAGG 2 cut(s) 925, 1186
AspS9I GGNCC 4 cut(s) 737, 1097, 1457, 1529
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 6 cut(s) 266, 410, 613, 893, 1202, 1265
AvaII GGWCC 3 cut(s) 737, 1097, 1457
AvrII CCTAGG 2 cut(s) 925, 1186
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 742
BanII GRGCYC 2 cut(s) 639, 999
BbsI GAAGAC 2 cut(s) 828, 1413
Bbv12I GWGCWC 2 cut(s) 639, 999
BbvI GCAGC 1 cut(s) 276
BccI CCATC 3 cut(s) 29, 224, 1330
BceAI ACGGC 1 cut(s) 1432
BciVI GTATCC 1 cut(s) 640
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 8 cut(s) 206, 227, 494, 926, 1187, 1253, 1268, 1286
BfrI CTTAAG 1 cut(s) 853
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 2 cut(s) 265, 1528
BlnI CCTAGG 2 cut(s) 925, 1186
BlsI GCNGC 2 cut(s) 266, 1529
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 3 cut(s) 737, 1097, 1457
BmgT120I GGNCC 4 cut(s) 737, 1097, 1457, 1529
BmiI GGNNCC 5 cut(s) 744, 1098, 1458, 1459, 1531
BmrFI CCNGG 1 cut(s) 88
BpiI GAAGAC 2 cut(s) 828, 1413
BpmI CTGGAG 1 cut(s) 1085
BpuEI CTTGAG 2 cut(s) 376, 424
BpuMI CCSGG 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 688, 925, 1186
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 4 cut(s) 1058, 1088, 1476, 1506
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 589, 610, 931
Bse1I ACTGG 3 cut(s) 811, 955, 1587
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 982
BseDI CCNNGG 3 cut(s) 688, 925, 1186
BseGI GGATG 3 cut(s) 21, 597, 1032
BseLI CCNNNNNNNGG 4 cut(s) 107, 589, 610, 931
BseMI GCAATG 1 cut(s) 982
BseMII CTCAG 4 cut(s) 298, 980, 1122, 1349
BseNI ACTGG 3 cut(s) 811, 955, 1587
BseRI GAGGAG 2 cut(s) 125, 128
BseXI GCAGC 1 cut(s) 276
BshFI GGCC 2 cut(s) 1386, 1530
BshNI GGYRCC 1 cut(s) 742
BsiHKAI GWGCWC 2 cut(s) 639, 999
BsiSI CCGG 2 cut(s) 87, 740
BslFI GGGAC 2 cut(s) 915, 1443
BslI CCNNNNNNNGG 4 cut(s) 107, 589, 610, 931
BsmAI GTCTC 1 cut(s) 351
BsmFI GGGAC 2 cut(s) 915, 1443
BsnI GGCC 2 cut(s) 1386, 1530
Bsp1286I GDGCHC 2 cut(s) 639, 999
Bsp143I GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
BspACI CCGC 3 cut(s) 784, 1152, 1527
BspANI GGCC 2 cut(s) 1386, 1530
BspCNI CTCAG 4 cut(s) 297, 979, 1121, 1350
BspLI GGNNCC 5 cut(s) 744, 1098, 1458, 1459, 1531
BspPI GGATC 5 cut(s) 210, 703, 1126, 1546, 1581
BspT107I GGYRCC 1 cut(s) 742
BspTI CTTAAG 1 cut(s) 853
BsrDI GCAATG 1 cut(s) 982
BsrI ACTGG 3 cut(s) 811, 955, 1587
BssECI CCNNGG 3 cut(s) 688, 925, 1186
BssMI GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
BssT1I CCWWGG 3 cut(s) 688, 925, 1186
Bst4CI ACNGT 2 cut(s) 377, 521
Bst6I CTCTTC 4 cut(s) 146, 250, 456, 786
BstAFI CTTAAG 1 cut(s) 853
BstDEI CTNAG 5 cut(s) 171, 284, 966, 1108, 1358
BstF5I GGATG 3 cut(s) 21, 597, 1032
BstKTI GATC 7 cut(s) 67, 205, 698, 1121, 1132, 1541, 1576
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
BstMWI GCNNNNNNNGC 1 cut(s) 994
BstNSI RCATGY 2 cut(s) 1414, 1490
BstSCI CCNGG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 2 cut(s) 828, 1413
BstX2I RGATCY 2 cut(s) 202, 695
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 2 cut(s) 202, 695
Bsu36I CCTNAGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 1386, 1530
BtsCI GGATG 3 cut(s) 21, 597, 1032
Cfr13I GGNCC 4 cut(s) 737, 1097, 1457, 1529
CseI GACGC 2 cut(s) 479, 493
CspCI CAANNNNNGTGG 4 cut(s) 376, 411, 1239, 1274
CviAII CATG 2 cut(s) 1411, 1487
DdeI CTNAG 5 cut(s) 171, 284, 966, 1108, 1358
DpnI GATC 7 cut(s) 66, 204, 697, 1120, 1131, 1540, 1575
DpnII GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
DraI TTTAAA 1 cut(s) 567
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
Eam1104I CTCTTC 4 cut(s) 146, 250, 456, 786
EarI CTCTTC 4 cut(s) 146, 250, 456, 786
EciI GGCGGA 2 cut(s) 773, 1141
Ecl136II GAGCTC 2 cut(s) 637, 997
Eco130I CCWWGG 3 cut(s) 688, 925, 1186
Eco24I GRGCYC 2 cut(s) 639, 999
Eco47I GGWCC 3 cut(s) 737, 1097, 1457
Eco53kI GAGCTC 2 cut(s) 637, 997
Eco57I CTGAAG 5 cut(s) 127, 480, 694, 840, 974
Eco81I CCTNAGG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 637, 997
EcoO109I RGGNCCY 2 cut(s) 1097, 1457
EcoT14I CCWWGG 3 cut(s) 688, 925, 1186
EcoT38I GRGCYC 2 cut(s) 639, 999
ErhI CCWWGG 3 cut(s) 688, 925, 1186
FaeI CATG 2 cut(s) 1414, 1490
FalI AAGNNNNNCTT 2 cut(s) 1039, 1071
FaqI GGGAC 2 cut(s) 915, 1443
FatI CATG 2 cut(s) 1410, 1486
Fnu4HI GCNGC 2 cut(s) 265, 1528
FokI GGATG 3 cut(s) 8, 584, 1039
FriOI GRGCYC 2 cut(s) 639, 999
Fsp4HI GCNGC 2 cut(s) 265, 1528
FspBI CTAG 8 cut(s) 206, 227, 494, 926, 1187, 1253, 1268, 1286
GluI GCNGC 2 cut(s) 265, 1528
GsuI CTGGAG 1 cut(s) 1085
HaeIII GGCC 2 cut(s) 1386, 1530
HapII CCGG 2 cut(s) 87, 740
HgaI GACGC 2 cut(s) 479, 493
Hin1II CATG 2 cut(s) 1414, 1490
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HindIII AAGCTT 3 cut(s) 184, 769, 986
HpaII CCGG 2 cut(s) 87, 740
HphI GGTGA 6 cut(s) 266, 410, 613, 893, 1202, 1265
Hpy166II GTNNAC 2 cut(s) 1053, 1273
Hpy188III TCNNGA 9 cut(s) 62, 115, 206, 458, 591, 992, 1133, 1142, 1241
Hpy8I GTNNAC 2 cut(s) 1053, 1273
HpyAV CCTTC 2 cut(s) 1472, 1564
HpyCH4III ACNGT 2 cut(s) 377, 521
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 7 cut(s) 765, 975, 980, 1046, 1342, 1414, 1554
HpyF10VI GCNNNNNNNGC 1 cut(s) 994
HpyF3I CTNAG 5 cut(s) 171, 284, 966, 1108, 1358
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 2 cut(s) 1414, 1490
KflI GGGWCCC 1 cut(s) 1457
Kzo9I GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
LmnI GCTCC 3 cut(s) 642, 994, 1203
Lsp1109I GCAGC 1 cut(s) 276
MaeI CTAG 8 cut(s) 206, 227, 494, 926, 1187, 1253, 1268, 1286
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 7 cut(s) 287, 398, 542, 809, 1190, 1585, 1633
MalI GATC 7 cut(s) 66, 204, 697, 1120, 1131, 1540, 1575
MboI GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
MboII GAAGA 7 cut(s) 133, 237, 473, 803, 833, 999, 1418
MfeI CAATTG 2 cut(s) 195, 1638
MflI RGATCY 2 cut(s) 202, 695
MhlI GDGCHC 2 cut(s) 639, 999
MlyI GAGTC 4 cut(s) 155, 789, 1163, 1369
MmeI TCCRAC 1 cut(s) 1464
MroXI GAANNNNTTC 1 cut(s) 728
MspCI CTTAAG 1 cut(s) 853
MspI CCGG 2 cut(s) 87, 740
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 2 cut(s) 195, 1638
MwoI GCNNNNNNNGC 1 cut(s) 994
NciI CCSGG 1 cut(s) 88
NdeII GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
NlaIII CATG 2 cut(s) 1414, 1490
NlaIV GGNNCC 5 cut(s) 744, 1098, 1458, 1459, 1531
NmuCI GTSAC 2 cut(s) 398, 1190
NspI RCATGY 2 cut(s) 1414, 1490
PcsI WCGNNNNNNNCGW 1 cut(s) 1610
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 7 cut(s) 93, 436, 454, 594, 796, 1030, 1264
PflFI GACNNNGTC 1 cut(s) 906
PflMI CCANNNNNTGG 2 cut(s) 107, 610
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 2 cut(s) 266, 1529
PleI GAGTC 4 cut(s) 155, 788, 1163, 1368
PpsI GAGTC 4 cut(s) 155, 788, 1163, 1368
PpuMI RGGWCCY 2 cut(s) 1097, 1457
PsiI TTATAA 1 cut(s) 1299
Psp124BI GAGCTC 2 cut(s) 639, 999
Psp5II RGGWCCY 2 cut(s) 1097, 1457
PspN4I GGNNCC 5 cut(s) 744, 1098, 1458, 1459, 1531
PspPI GGNCC 4 cut(s) 737, 1097, 1457, 1529
PspPPI RGGWCCY 2 cut(s) 1097, 1457
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PsuI RGATCY 2 cut(s) 202, 695
PsyI GACNNNGTC 1 cut(s) 906
SacI GAGCTC 2 cut(s) 639, 999
SatI GCNGC 2 cut(s) 265, 1528
Sau3AI GATC 7 cut(s) 64, 202, 695, 1118, 1129, 1538, 1573
Sau96I GGNCC 4 cut(s) 737, 1097, 1457, 1529
SchI GAGTC 4 cut(s) 155, 789, 1163, 1369
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 639, 999
SinI GGWCC 3 cut(s) 737, 1097, 1457
SmlI CTYRAG 3 cut(s) 355, 403, 853
SmoI CTYRAG 3 cut(s) 355, 403, 853
SsiI CCGC 3 cut(s) 784, 1152, 1527
SspMI CTAG 8 cut(s) 206, 227, 494, 926, 1187, 1253, 1268, 1286
SstI GAGCTC 2 cut(s) 639, 999
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 3 cut(s) 688, 925, 1186
TaaI ACNGT 2 cut(s) 377, 521
TaiI ACGT 1 cut(s) 851
TaqI TCGA 1 cut(s) 1452
TauI GCSGC 1 cut(s) 1530
TfiI GAWTC 7 cut(s) 93, 436, 454, 594, 796, 1030, 1264
TseFI GTSAC 2 cut(s) 398, 1190
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 2 cut(s) 398, 1190
TspDTI ATGAA 6 cut(s) 17, 237, 525, 586, 721, 1225
TspGWI ACGGA 2 cut(s) 419, 563
Tth111I GACNNNGTC 1 cut(s) 906
Van91I CCANNNNNTGG 2 cut(s) 107, 610
Vha464I CTTAAG 1 cut(s) 853
VpaK11BI GGWCC 3 cut(s) 737, 1097, 1457
XapI RAATTY 6 cut(s) 885, 1040, 1112, 1160, 1216, 1245
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 2 cut(s) 1414, 1490
XmaJI CCTAGG 2 cut(s) 925, 1186
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 8 cut(s) 206, 227, 494, 926, 1187, 1253, 1268, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.