Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5439810 .. 5459073

Gene Structure 19264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGCGGCAACAACGATAGCTCTCGCATTTCCCTCGAGCTCGGCCTCAACTCCTACAGCTCGACTACTTCGAAGGAGGTAGCCGCTACGACTATCGCTCCGGTGGATGGGGCGGCTACCACGATAGCTCTCGCATTTCCCTTGAGCTCGGCCTCAACTCCTACCGACTCGACTACTCCGAAGGAGGTGGCCGCTACGCCTATCGCTCCGGTGGATGGGGCGGCTACCACGATAGCTCTCGCATTTCCCTTGAGCTCGGCCTCAACTCCTACGGTTCGATCCGCGAAGGTGTTTTTTTGGAGCGAGAAGGGACAAAGCTTGTTGCTAGGCTTAGCGAAGAAATGGTTATGGGCCTCAAAAACAGGCCTTCATGAATGGGCTTCGCAAGTACGTGCCTTGTCGTGCCAAAATGCTCATTTTGGGTCCAAACAACAGCCTCTAGCCTTCGGCAGCACGTTTGGTGCGTACGACGCGGCCAAGAGAGTGACATACTGGAAGAATAATCACAGCATGCGTTTACGTCCACCAGATTTGTCCAAGAAGTATGAGGTTGTGAAGGATATTGGGTCTGGGAATTTTGGTGTAGCAAGGCTGGTCAGAGACAAGAATACCCAAGAACTCTTAGCTGTTAAGTTCATTGAGAGAGGCCTTAAGTCATTACTAAGTTCTCTGCCAAAGTCTACTGTGGGAACACCTGCTTATATTGCACCTGAAGTTCTATCTAAAAACAATATGATGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0080167 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

248

Amino Acids

26.47

Weight (kDa)

9.74

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	680
AccII	CGCG	2 cut(s)	284, 473
AciI	CCGC	7 cut(s)	6, 84, 113, 192, 221, 282, 473
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	189, 474
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	2 cut(s)	390, 467
AfiI	CCNNNNNNNGG	2 cut(s)	107, 215
AflII	CTTAAG	1 cut(s)	650
AluBI	AGCT	9 cut(s)	21, 40, 60, 128, 147, 236, 255, 318, 626
AluI	AGCT	9 cut(s)	21, 40, 60, 128, 147, 236, 255, 318, 626
Alw21I	GWGCWC	3 cut(s)	42, 149, 257
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	8 cut(s)	43, 150, 189, 258, 351, 364, 474, 646
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	351, 423
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	423
BanII	GRGCYC	3 cut(s)	42, 149, 257
Bbv12I	GWGCWC	3 cut(s)	42, 149, 257
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	101, 209, 730
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	2 cut(s)	326, 440
BfmI	CTRYAG	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	7 cut(s)	7, 84, 114, 192, 222, 451, 474
BlpI	GCTNAGC	1 cut(s)	331
BlsI	GCNGC	7 cut(s)	8, 85, 115, 193, 223, 452, 475
Bme18I	GGWCC	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	351, 423
BmiI	GGNNCC	1 cut(s)	424
Bpu1102I	GCTNAGC	1 cut(s)	331
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	163, 271
BsaAI	YACGTR	1 cut(s)	392
BsaWI	WCCGGW	2 cut(s)	100, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 215
Bse1I	ACTGG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	112, 220
BseLI	CCNNNNNNNGG	2 cut(s)	107, 215
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	284, 473
BshFI	GGCC	8 cut(s)	45, 152, 191, 260, 353, 366, 476, 648
BsiHKAI	GWGCWC	3 cut(s)	42, 149, 257
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	101, 209
BsiWI	CGTACG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	107, 215
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	8 cut(s)	45, 152, 191, 260, 353, 366, 476, 648
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	42, 149, 257
Bsp143I	GATC	1 cut(s)	278
Bsp1720I	GCTNAGC	1 cut(s)	331
BspACI	CCGC	7 cut(s)	6, 84, 113, 192, 221, 282, 473
BspANI	GGCC	8 cut(s)	45, 152, 191, 260, 353, 366, 476, 648
BspFNI	CGCG	2 cut(s)	284, 473
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	273
BspT104I	TTCGAA	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	274, 685
BstAFI	CTTAAG	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	3 cut(s)	331, 622, 662
BstF5I	GGATG	2 cut(s)	112, 220
BstFNI	CGCG	2 cut(s)	284, 473
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 704
BstNSI	RCATGY	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	55
BstUI	CGCG	2 cut(s)	284, 473
BstV1I	GCAGC	1 cut(s)	462
BsuRI	GGCC	8 cut(s)	45, 152, 191, 260, 353, 366, 476, 648
BtsCI	GGATG	2 cut(s)	112, 220
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	1 cut(s)	512
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	351, 423
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	389, 466
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	2 cut(s)	371, 511
CviQI	GTAC	2 cut(s)	389, 466
DdeI	CTNAG	3 cut(s)	331, 622, 662
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	189, 474
Ecl136II	GAGCTC	3 cut(s)	40, 147, 255
Eco147I	AGGCCT	2 cut(s)	366, 648
Eco24I	GRGCYC	3 cut(s)	42, 149, 257
Eco47I	GGWCC	1 cut(s)	423
Eco53kI	GAGCTC	3 cut(s)	40, 147, 255
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	3 cut(s)	40, 147, 255
EcoT38I	GRGCYC	3 cut(s)	42, 149, 257
FaeI	CATG	2 cut(s)	374, 514
FaiI	YATR	7 cut(s)	349, 372, 490, 512, 546, 702, 734
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	370, 510
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	7 cut(s)	7, 84, 114, 192, 222, 451, 474
FokI	GGATG	2 cut(s)	119, 227
FriOI	GRGCYC	3 cut(s)	42, 149, 257
Fsp4HI	GCNGC	7 cut(s)	7, 84, 114, 192, 222, 451, 474
FspBI	CTAG	2 cut(s)	326, 440
GluI	GCNGC	7 cut(s)	7, 84, 114, 192, 222, 451, 474
HaeIII	GGCC	8 cut(s)	45, 152, 191, 260, 353, 366, 476, 648
HapII	CCGG	2 cut(s)	101, 209
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	374, 514
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	2 cut(s)	101, 209
Hpy166II	GTNNAC	3 cut(s)	518, 524, 681
Hpy188I	TCNGA	2 cut(s)	180, 599
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	518, 524, 681
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	7 cut(s)	67, 175, 280, 301, 377, 454, 550
HpyCH4III	ACNGT	2 cut(s)	274, 685
HpyCH4IV	ACGT	3 cut(s)	391, 455, 520
HpyCH4V	TGCA	1 cut(s)	707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 704
HpyF3I	CTNAG	3 cut(s)	331, 622, 662
HpySE526I	ACGT	3 cut(s)	391, 455, 520
Hsp92II	CATG	2 cut(s)	374, 514
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	103, 211, 300
Lsp1109I	GCAGC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	326, 440
MaeII	ACGT	3 cut(s)	391, 455, 520
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	349, 508
MhlI	GDGCHC	3 cut(s)	42, 149, 257
MluCI	AATT	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	161
MseI	TTAA	2 cut(s)	630, 651
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	101, 209
MvnI	CGCG	2 cut(s)	284, 473
MwoI	GCNNNNNNNGC	2 cut(s)	470, 704
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	374, 514
NlaIV	GGNNCC	1 cut(s)	424
NmeAIII	GCCGAG	3 cut(s)	21, 128, 236
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	703
PceI	AGGCCT	2 cut(s)	366, 648
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 176, 461
Pfl23II	CGTACG	1 cut(s)	465
PkrI	GCNGC	7 cut(s)	8, 85, 115, 193, 223, 452, 475
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	3 cut(s)	42, 149, 257
PspLI	CGTACG	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	351, 423
PspXI	VCTCGAGB	1 cut(s)	35
RsaI	GTAC	2 cut(s)	390, 467
RsaNI	GTAC	2 cut(s)	389, 466
SacI	GAGCTC	3 cut(s)	42, 149, 257
SaqAI	TTAA	2 cut(s)	630, 651
SatI	GCNGC	7 cut(s)	7, 84, 114, 192, 222, 451, 474
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	2 cut(s)	351, 423
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	3 cut(s)	42, 149, 257
SfcI	CTRYAG	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	4 cut(s)	35, 142, 250, 650
SmoI	CTYRAG	4 cut(s)	35, 142, 250, 650
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	2 cut(s)	366, 648
SsiI	CCGC	7 cut(s)	6, 84, 113, 192, 221, 282, 473
SspMI	CTAG	2 cut(s)	326, 440
SstI	GAGCTC	3 cut(s)	42, 149, 257
StuI	AGGCCT	2 cut(s)	366, 648
TaaI	ACNGT	2 cut(s)	274, 685
TaiI	ACGT	3 cut(s)	394, 458, 523
TaqI	TCGA	5 cut(s)	36, 62, 71, 170, 277
TasI	AATT	1 cut(s)	574
TauI	GCSGC	6 cut(s)	9, 86, 116, 194, 224, 476
Tru1I	TTAA	2 cut(s)	630, 651
Tru9I	TTAA	2 cut(s)	630, 651
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	359, 387, 625
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	2 cut(s)	326, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.