Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7340890 .. 7343762

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTCTTCATCTTTTTCTACACATTGCTTTAGATATGATGTCTTTGTTAGTTTCAGAGGTGAGGATACCCGCAATTCTTTTACCAGCCATCTTCTTAAGGCTTTAGATGGGAAGAAAGTTGTCACCTATATGGATTACAAACTTGAGAATGGAGTTGAAATCGCACCTGCTCTCCGGAAAGCAATTGAGGAATCAAGGATTTCTTTGATTACTTTTTCCGAGAACTACGCTTCTTCCCCATGGTGCTTGGATGAACTTGTGCATATACTGGAATGCAAGGAACGATATCAACAGTTTGTTATACCTATTTTTTATAGAGTAAATCCGTCACATGTTCGATACCAGAGGCAGAGTTATGCAGCTGCATTTGCTAAACATGAAGCAGGTTGTGACAAGATGGACAAAGTGCTCAAGTGGAAGGGTGCTTTGACAATAGCAGCCAACCTATCGGGGTTTGATTCAGACACTATTAGTGGTATCAAAATTCTCATTGATATGTCTCTCATATCAATCAAAAATGAGTATGGCAACCGTAATTTCCTATGGATGCATGATGTGATACAAGAAATGGGCTGGGCAATTGTTCACGAACAATGTCCCGAAGAACCTGGAAAGCGGAGTAGGTTGTGGAACCTTGAGGATGTCTGTCATGTGTTGGGAAGAAATACGGTAAGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

227

Amino Acids

26.14

Weight (kDa)

7.08

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	13 - 166	5.3e-49	TIR domain
TIR_2	PF13676	15 - 122	2.3e-13	TIR domain
WHD_ROQ1	PF23282	159 - 199	7.3e-06	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	2 cut(s)	178, 377
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	2 cut(s)	73, 619
AcsI	RAATTY	1 cut(s)	486
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	507
Aor13HI	TCCGGA	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	362, 365, 440
ApoI	RAATTY	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	74, 118
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	352, 374, 452
BccI	CCATC	3 cut(s)	99, 104, 394
BciT130I	CCWGG	1 cut(s)	612
BciVI	GTATCC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	507
BfrI	CTTAAG	1 cut(s)	98
BfuAI	ACCTGC	2 cut(s)	178, 377
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	363, 366, 441
BlsI	GCNGC	3 cut(s)	364, 367, 442
Bme1390I	CCNGG	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	540
BpuEI	CTTGAG	3 cut(s)	167, 398, 659
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	259, 555, 649
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	352, 374, 452
BseYI	CCCAGC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	585
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	73, 619
BspEI	TCCGGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	635
BspMI	ACCTGC	2 cut(s)	178, 377
BspTI	CTTAAG	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	297, 536, 673
BstAFI	CTTAAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	259, 555, 649
BstMAI	GTCTC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	352, 374, 452
BsuI	GTATCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	259, 555, 649
BveI	ACCTGC	2 cut(s)	178, 377
CviAII	CATG	5 cut(s)	243, 335, 380, 554, 653
CviJI	RGCY	6 cut(s)	5, 90, 104, 365, 443, 576
CviKI_1	RGCY	6 cut(s)	5, 90, 104, 365, 443, 576
Eco130I	CCWWGG	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	5 cut(s)	246, 338, 383, 557, 656
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	242, 334, 379, 553, 652
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	363, 366, 441
FokI	GGATG	3 cut(s)	266, 562, 656
Fsp4HI	GCNGC	3 cut(s)	363, 366, 441
GluI	GCNGC	3 cut(s)	363, 366, 441
GsaI	CCCAGC	1 cut(s)	580
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	5 cut(s)	246, 338, 383, 557, 656
HinfI	GANTC	2 cut(s)	194, 461
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	74, 118
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	59, 223, 466
Hpy188III	TCNNGA	3 cut(s)	178, 590, 602
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	3 cut(s)	297, 536, 673
HpyCH4V	TGCA	5 cut(s)	265, 279, 362, 368, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
Hsp92II	CATG	5 cut(s)	246, 338, 383, 557, 656
Kpn2I	TCCGGA	1 cut(s)	177
LpnPI	CCDG	9 cut(s)	100, 183, 191, 257, 359, 372, 562, 597, 624
Lsp1109I	GCAGC	3 cut(s)	352, 374, 452
LweI	GCATC	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	124, 330, 392
MboII	GAAGA	5 cut(s)	86, 127, 228, 617, 675
MfeI	CAATTG	2 cut(s)	186, 582
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	5 cut(s)	76, 186, 486, 538, 582
MnlI	CCTC	5 cut(s)	53, 58, 184, 342, 634
Mph1103I	ATGCAT	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	177
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	131, 497
MspA1I	CMGCKG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	2 cut(s)	186, 582
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	242
NlaIII	CATG	5 cut(s)	246, 338, 383, 557, 656
NlaIV	GGNNCC	1 cut(s)	635
NmuCI	GTSAC	3 cut(s)	124, 330, 392
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	178
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	194, 461
PkrI	GCNGC	3 cut(s)	364, 367, 442
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	131, 497
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	363, 366, 441
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	131, 497
SmlI	CTYRAG	4 cut(s)	98, 146, 413, 638
SmoI	CTYRAG	4 cut(s)	98, 146, 413, 638
Sse9I	AATT	5 cut(s)	76, 186, 486, 538, 582
SsiI	CCGC	2 cut(s)	73, 619
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	297, 536, 673
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	76, 186, 486, 538, 582
TfiI	GAWTC	2 cut(s)	194, 461
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	3 cut(s)	124, 330, 392
TseI	GCWGC	3 cut(s)	362, 365, 440
Tsp45I	GTSAC	3 cut(s)	124, 330, 392
TspDTI	ATGAA	2 cut(s)	270, 396
TspGWI	ACGGA	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.