Rroxscaffold_3G00228000
ERF Family

AP2 ERF and B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
12302109 .. 12305849
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228000.1

Sequence Viewer

Length: 318 bp
ATGCAACGGACTAAAGACAGATTTCGGCCTTGCCCTTGTGCTTGCGGTTCGGTGGGCATCCATCTTGTAGAATTCAACAATCGATTATCCAAAATTAAACACCGTGATTTTGGACTGCGGCGAACCATAAATTATATTTTGTACTCTCTTGACACGAAGAAGACTTGTAGAAGAAATGAAATGGCTTTGGAAATGGAAGATGATTTGTCAAGTACGGTCTCAAACGCAGGCACGACAACAAGGCGGAAGAGGACATATCAAGCAGAAGCTTCTATTTCAAGTATCACTGGTTTCTTGGTTCAAGAGAGTAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.98

Weight (kDa)

9.63

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 45, 118, 244
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 2 cut(s) 143, 214
AfeI AGCGCT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 76, 279, 302
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 167
BccI CCATC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 315
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 82
BseGI GGATG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 292
BshFI GGCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 223
BspACI CCGC 3 cut(s) 45, 118, 244
BspANI GGCC 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 104, 217
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 43, 229
BstF5I GGATG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 1 cut(s) 28
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 43, 229
CfoI GCGC 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 142, 213
CviJI RGCY 3 cut(s) 28, 185, 269
CviKI_1 RGCY 3 cut(s) 28, 185, 269
CviQI GTAC 2 cut(s) 142, 213
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EciI GGCGGA 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 71
FaiI YATR 3 cut(s) 128, 135, 256
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 28
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 149, 302
HpyCH4III ACNGT 2 cut(s) 104, 217
HpyCH4V TGCA 1 cut(s) 4
HspAI GCGC 1 cut(s) 312
LpnPI CCDG 2 cut(s) 213, 273
LweI GCATC 1 cut(s) 66
MboII GAAGA 5 cut(s) 169, 172, 183, 209, 259
MluCI AATT 3 cut(s) 71, 93, 130
MnlI CCTC 1 cut(s) 243
MseI TTAA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 120
RsaI GTAC 2 cut(s) 143, 214
RsaNI GTAC 2 cut(s) 142, 213
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 119
SetI ASST 1 cut(s) 271
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 3 cut(s) 71, 93, 130
SsiI CCGC 3 cut(s) 45, 118, 244
TaaI ACNGT 2 cut(s) 104, 217
TaqI TCGA 1 cut(s) 82
TasI AATT 3 cut(s) 71, 93, 130
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.