Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

14499073 .. 14501890

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATGGACACGATAAAGATGGCAAAGTAACTTATGAGGAATTGAAGAGTGGTCTTCAAAAGGTTGGTTTGCGATTGGTTGAATCGGAGGTTAAGATGCTTGATGGAAGTGAGGAAGAAATCACCAAGGAGGCCGCCCAAGCACAGGGGACCGGCATTGGTGCCACTGTTTTGCCCATACCACCATTCAAAGACCTCTACTTCTTAACTTTCCGAGCTCCTAGGCCGGACCGGGTCCTACCTCGTGAGATTCTATTCCGAAGACGTCATCGCCTTATACGGTCTACCCATTCCGGTCCTCCGCGGGACTCACGGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010152 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0021700 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

9.69

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	304
AciI	CCGC	3 cut(s)	135, 302, 304
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	46, 59, 83, 190
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	132, 224
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	150, 229, 235, 296
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	4 cut(s)	150, 229, 235, 296
AvrII	CCTAGG	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	2 cut(s)	47, 268
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	2 cut(s)	14, 98
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	135
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	4 cut(s)	150, 229, 235, 296
BmgT120I	GGNCC	4 cut(s)	150, 229, 235, 296
BmiI	GGNNCC	3 cut(s)	151, 163, 236
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	2 cut(s)	47, 268
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	126, 221, 302
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	126, 221, 302
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	134, 226
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	153, 227, 232, 294
BslFI	GGGAC	2 cut(s)	163, 320
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	163, 320
BsnI	GGCC	2 cut(s)	134, 226
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	3 cut(s)	135, 302, 304
BspANI	GGCC	2 cut(s)	134, 226
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	151, 163, 236
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	126, 221, 302
BssNI	GRCGYC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	126, 221
Bst2BI	CACGAG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	169, 282
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	265
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	47, 268
BsuRI	GGCC	2 cut(s)	134, 226
BtgI	CCRYGG	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	4 cut(s)	150, 229, 235, 296
Cfr42I	CCGCGG	1 cut(s)	305
CpoI	CGGWCCG	1 cut(s)	229
CspI	CGGWCCG	1 cut(s)	229
CviJI	RGCY	3 cut(s)	134, 218, 226
CviKI_1	RGCY	3 cut(s)	134, 218, 226
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	126, 221
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	4 cut(s)	150, 229, 235, 296
Eco53kI	GAGCTC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	126, 221
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	126, 221
FaiI	YATR	3 cut(s)	36, 179, 278
FaqI	GGGAC	2 cut(s)	163, 320
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	134, 226
HapII	CCGG	4 cut(s)	153, 227, 232, 294
Hin1I	GRCGYC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	83, 250, 308
HpaII	CCGG	4 cut(s)	153, 227, 232, 294
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	88, 215, 260
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	169, 282
HpyCH4IV	ACGT	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	5 cut(s)	131, 166, 240, 245, 307
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	28
MboII	GAAGA	4 cut(s)	47, 58, 128, 273
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	31, 82, 106, 124, 206, 252, 309
MseI	TTAA	2 cut(s)	93, 206
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	4 cut(s)	153, 227, 232, 294
MspR9I	CCNGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	233
NlaIV	GGNNCC	3 cut(s)	151, 163, 236
PfeI	GAWTC	2 cut(s)	83, 250
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	151, 163, 236
PspPI	GGNCC	4 cut(s)	150, 229, 235, 296
PspPPI	RGGWCCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	233
Rsr2I	CGGWCCG	1 cut(s)	229
RsrII	CGGWCCG	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	93, 206
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	4 cut(s)	150, 229, 235, 296
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	6 cut(s)	66, 93, 198, 220, 244, 268
SfaNI	GCATC	1 cut(s)	87
Sfr303I	CCGCGG	1 cut(s)	305
SgrBI	CCGCGG	1 cut(s)	305
SinI	GGWCC	4 cut(s)	150, 229, 235, 296
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	135, 302, 304
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	126, 221
TaaI	ACNGT	2 cut(s)	169, 282
TaiI	ACGT	1 cut(s)	268
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	83, 250
Tru1I	TTAA	2 cut(s)	93, 206
Tru9I	TTAA	2 cut(s)	93, 206
TscAI	CASTG	1 cut(s)	172
TspRI	CASTG	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	4 cut(s)	150, 229, 235, 296
XmaJI	CCTAGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.