Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17623147 .. 17624478

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAAGATGGTCATTTGTTACTAAATGAACAGATGCTATGTCTGCGTGTTCGTGTTCCATCTTTCCACCCCTTCAATGCCAGCCATTCTCATTACATTGATAATTCTGGCACTTTCTTGGTCTCCATTAATGGCACTTACGAAGCTTCACTTACTAATCCATACTCAACATCTTCTGCTTTCTATTTGTGTATCATATATACGGCCTCTAACACCGTCATCTGGTCAGCCAACCCCAACATGCCCATTTCAGTAACTTCTAGCCTCTTATTCACCATCAATGGCCTTAGCATCACTGATGACTCCAACAAGTTTGTATGGTCCACACCCTTATTGAACTATCCGGTTGCTGCTCTCCAGCTTTTAGAAACCGGGAACCTCATCTTGGTTGATGCTAAAAATGTGTCTCTGTGGCAGACTTTTGATTATCCAACAGATACTCTTGTCATAGGACAGCGTTTATATGTTGGTAAATCATTAGTCAGTGCTGTTTCAGAGAGTAACTCCTCTGAGGTTAGTTACAGTCTTGCCGTGACCAGTGAGGATATGGTGCTGCAATGGAAGGGCCAGACTTATGCGAAATTATCCGTGGAAACAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase S_locus_glycop Transgly

Protein Analysis

201

Amino Acids

22.15

Weight (kDa)

4.65

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	72 - 158	3.6e-15	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	222, 385
AgsI	TTSAA	2 cut(s)	76, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	3 cut(s)	146, 361, 602
AluI	AGCT	3 cut(s)	146, 361, 602
Alw26I	GTCTC	2 cut(s)	127, 411
AoxI	GGCC	3 cut(s)	204, 283, 565
ApeKI	GCWGC	2 cut(s)	350, 553
AseI	ATTAAT	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	321, 565
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	321
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BbvI	GCAGC	2 cut(s)	337, 540
BccI	CCATC	3 cut(s)	2, 67, 284
BceAI	ACGGC	2 cut(s)	219, 515
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	127, 411
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	351, 554
BlsI	GCNGC	2 cut(s)	352, 555
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	321, 565
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	3 cut(s)	24, 300, 382
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	588
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 385
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	222, 385
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	337, 540
BshFI	GGCC	3 cut(s)	206, 285, 567
BsiSI	CCGG	2 cut(s)	344, 372
BslI	CCNNNNNNNGG	2 cut(s)	222, 385
BsmAI	GTCTC	2 cut(s)	127, 411
BsnI	GGCC	3 cut(s)	206, 285, 567
Bso31I	GGTCTC	1 cut(s)	127
BspANI	GGCC	3 cut(s)	206, 285, 567
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	588
Bst4CI	ACNGT	2 cut(s)	217, 524
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	287, 510, 603
BstDSI	CCRYGG	1 cut(s)	588
BstMAI	GTCTC	2 cut(s)	127, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	337, 540
BsuRI	GGCC	3 cut(s)	206, 285, 567
BtgI	CCRYGG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	294, 490, 544
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	321, 565
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	84, 146, 206, 230, 264, 285, 361, 567, 602
CviKI_1	RGCY	9 cut(s)	84, 146, 206, 230, 264, 285, 361, 567, 602
DdeI	CTNAG	3 cut(s)	287, 510, 603
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	321
FaeI	CATG	1 cut(s)	244
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	351, 554
Fsp4HI	GCNGC	2 cut(s)	351, 554
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	351, 554
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	206, 285, 567
HapII	CCGG	2 cut(s)	344, 372
Hin1II	CATG	1 cut(s)	244
HindIII	AAGCTT	2 cut(s)	144, 600
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	344, 372
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	496, 511
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	2 cut(s)	82, 556
HpyCH4III	ACNGT	2 cut(s)	217, 524
HpyCH4V	TGCA	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	287, 510, 603
Hsp92II	CATG	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	93, 94, 208, 357, 371, 385, 550, 581
Lsp1109I	GCAGC	2 cut(s)	337, 540
LweI	GCATC	3 cut(s)	24, 300, 382
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	5 cut(s)	18, 253, 500, 518, 532
MboII	GAAGA	2 cut(s)	17, 165
MluCI	AATT	2 cut(s)	103, 581
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	330, 455
MnlI	CCTC	6 cut(s)	217, 275, 389, 505, 517, 535
MseI	TTAA	1 cut(s)	129
MspI	CCGG	2 cut(s)	344, 372
MspR9I	CCNGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	373
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	352, 555
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	2 cut(s)	321, 565
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	2 cut(s)	351, 554
Sau96I	GGNCC	2 cut(s)	321, 565
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	5 cut(s)	148, 363, 381, 516, 604
SfaNI	GCATC	3 cut(s)	24, 300, 382
SinI	GGWCC	1 cut(s)	321
Sse9I	AATT	2 cut(s)	103, 581
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	217, 524
TasI	AATT	2 cut(s)	103, 581
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	301, 490, 544
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	350, 553
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	3 cut(s)	301, 490, 544
VpaK11BI	GGWCC	1 cut(s)	321
VspI	ATTAAT	1 cut(s)	129
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.