Rroxscaffold_3G00241930
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
34260314 .. 34262444
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241930.1

Sequence Viewer

Length: 240 bp
ATGGATGCTAATGATTTTAAATCTGTCCTTGAAACAGAAGAAGGGTTTTCCATTGGAAATATGGGTGGAGGAATTCGCACAAGCGTGAAGGGGTACCTCCTTTCGCAGCGGATCACTACGGCTTCAAACACGGTGCATGCAAACGAGAGCACCAATAGAAATTCCACTGCGCCCCAAGCTGCTGATTCGAACAAGAGACGAGCACGGACTTGGATTCATCTAATTCATATTGGCTCGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.59

Weight (kDa)

9.51

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 93
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 2 cut(s) 72, 160
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 2 cut(s) 32, 126
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw21I GWGCWC 2 cut(s) 152, 205
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 106, 179
ApoI RAATTY 2 cut(s) 72, 160
Asp718I GGTACC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 152, 205
BbvI GCAGC 2 cut(s) 118, 166
BceAI ACGGC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 2 cut(s) 107, 180
BlsI GCNGC 2 cut(s) 108, 181
BmiI GGNNCC 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 188
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 118, 166
BshNI GGYRCC 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 152, 205
BsmAI GTCTC 1 cut(s) 190
BsmBI CGTCTC 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 152, 205
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 93
BssMI GATC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 118, 166
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 137
CviJI RGCY 3 cut(s) 122, 179, 234
CviKI_1 RGCY 3 cut(s) 122, 179, 234
CviQI GTAC 1 cut(s) 94
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DraI TTTAAA 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 62, 138, 228
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 107, 180
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 107, 180
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 107, 180
HhaI GCGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 185, 214
HpyAV CCTTC 2 cut(s) 35, 82
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 136, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 170
KpnI GGTACC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 111
Lsp1109I GCAGC 2 cut(s) 118, 166
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 152, 205
MluCI AATT 3 cut(s) 72, 160, 222
MnlI CCTC 2 cut(s) 62, 107
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 140
NspV TTCGAA 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 83
PaeI GCATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 185, 214
PkrI GCNGC 2 cut(s) 108, 181
PspN4I GGNNCC 1 cut(s) 95
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 107, 180
Sau3AI GATC 1 cut(s) 111
SduI GDGCHC 2 cut(s) 152, 205
SetI ASST 2 cut(s) 99, 181
SfuI TTCGAA 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 83
SphI GCATGC 1 cut(s) 140
Sse9I AATT 3 cut(s) 72, 160, 222
SsiI CCGC 1 cut(s) 109
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 72, 160, 222
TfiI GAWTC 2 cut(s) 185, 214
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 106, 179
TspDTI ATGAA 2 cut(s) 206, 215
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 172
XapI RAATTY 2 cut(s) 72, 160
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.