Rroxscaffold_3G00246610

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
39758615 .. 39760647
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246610.1

Sequence Viewer

Length: 285 bp
ATGGCATCCCAGTCTGCTCTGTTCCATAGATCATCCAGAACAATCAGCACTAAGCTTGGTGATTTTGGGATTGCCGAAACTTGTGGATCTGCAGTTCCGGATTCAAACTACTGGGGTGATAGGGACTTCTGGATACATAGCCCCCAGAATATTCAAAGGGGGAGGGTAATAAAGAATCAGATGTGTTTACATTTTGGAGTTGTGGCCTTGGACCTTTCTTGTGGAAAGAGGACTCACCAGGGTGGAGAATATCATGTGCCACTTTTCCTGTGTTTGGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

94

Amino Acids

10.47

Weight (kDa)

8.47

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 97
AclWI GGATC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 105, 155
AjnI CCWGG 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 240
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AlwI GGATC 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 71, 128, 227
AvaII GGWCC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 2 cut(s) 4, 121
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 2 cut(s) 4, 121
BsaJI CCNNGG 2 cut(s) 207, 238
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 10, 116
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 207, 238
BseGI GGATG 2 cut(s) 5, 32
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 2 cut(s) 10, 116
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 2 cut(s) 29, 86
BspANI GGCC 1 cut(s) 206
BspEI TCCGGA 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 10, 116
BssECI CCNNGG 2 cut(s) 207, 238
BssMI GATC 2 cut(s) 29, 86
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 5, 32
BstKTI GATC 2 cut(s) 32, 89
BstMBI GATC 2 cut(s) 29, 86
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 2 cut(s) 5, 32
Cfr13I GGNCC 1 cut(s) 211
CviAII CATG 1 cut(s) 254
CviJI RGCY 3 cut(s) 55, 141, 206
CviKI_1 RGCY 3 cut(s) 55, 141, 206
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 31, 88
DpnII GATC 2 cut(s) 29, 86
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 257
FaiI YATR 3 cut(s) 27, 138, 255
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 253
FokI GGATG 1 cut(s) 19
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 3 cut(s) 101, 175, 232
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 71, 128, 227
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 36, 98, 130
Hpy8I GTNNAC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 29, 86
LpnPI CCDG 9 cut(s) 23, 49, 97, 111, 115, 158, 224, 251, 281
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 31, 88
MboI GATC 2 cut(s) 29, 86
MflI RGATCY 1 cut(s) 86
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 2 cut(s) 156, 222
MroI TCCGGA 1 cut(s) 97
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
NdeII GATC 2 cut(s) 29, 86
NlaIII CATG 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 277
OliI CACNNNNGTG 1 cut(s) 240
PfeI GAWTC 2 cut(s) 101, 175
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 2 cut(s) 29, 86
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 239
SetI ASST 2 cut(s) 57, 216
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 240
SspI AATATT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 207
TfiI GAWTC 2 cut(s) 101, 175
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.