Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

51274794 .. 51275237

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGGCGGCATTGGCCCTTAGGGGAAGCGAGGCATGCCTCGATTTCGCTAATTCCGCTTGGCGGTTTCCGTTCCGGCTTCCAAAGACCAGCTAGACATTCGCGGGGCCGCCGCCGAGGCTGCGAGGCATTTAGGCTCGAGGAATTCGGTGGCGTCTCAAGAAGTTGCGACGACAACGAGATGGAACATGAGAATGAGAAAATTGAGATGGACAGCGAGAAGAAGAATGATGACTTCTACGAGGACGAGGAGAGGGAACACGAGAATGAGAAGAAGAACGACGGCTGCTACGAGGACGAAGAGGCGCTCTTCGACATGCCCGGATTGCCGACTAGCATGGCCGAGGGTCCATCGCTCTCTCCACCTCGTCATTACTTGGACGGTATGAACGGGCGGACTATCGAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

147

Amino Acids

17.07

Weight (kDa)

4.82

Isoelectric Point (pI)

71.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	7 cut(s)	7, 56, 63, 103, 109, 112, 394
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	143, 421
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	92, 429, 438
AluI	AGCT	3 cut(s)	92, 429, 438
Alw26I	GTCTC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	14, 106, 339
ApeKI	GCWGC	2 cut(s)	120, 285
ApoI	RAATTY	2 cut(s)	143, 421
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	15, 106, 347
AsuC2I	CCSGG	1 cut(s)	321
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	19
BauI	CACGAG	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	107, 272
BccI	CCATC	3 cut(s)	175, 202, 358
BceAI	ACGGC	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	93, 333
BfoI	RGCGCY	1 cut(s)	308
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	5 cut(s)	8, 109, 112, 121, 286
BlsI	GCNGC	5 cut(s)	9, 110, 113, 122, 287
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	15, 106, 347
BmiI	GGNNCC	2 cut(s)	107, 348
BmrFI	CCNGG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	115, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	115, 342
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	107, 272
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	16, 108, 341
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	75, 321
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	3 cut(s)	16, 108, 341
BsoBI	CYCGRG	1 cut(s)	137
BspACI	CCGC	7 cut(s)	7, 56, 63, 103, 109, 112, 394
BspANI	GGCC	3 cut(s)	16, 108, 341
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	107, 348
BspQI	GCTCTTC	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	115, 342
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	294, 314
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 35, 55, 117, 120, 325, 435
BstNSI	RCATGY	2 cut(s)	38, 319
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	107, 272
Bsu36I	CCTNAGG	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	16, 108, 341
BtgZI	GCGATG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	15, 106, 347
CseI	GACGC	1 cut(s)	142
CviAII	CATG	4 cut(s)	35, 188, 316, 337
DdeI	CTNAG	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	294, 314
EarI	CTCTTC	2 cut(s)	294, 314
EciI	GGCGGA	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	38, 191, 319, 340
FaiI	YATR	5 cut(s)	36, 189, 317, 338, 386
FatI	CATG	4 cut(s)	34, 187, 315, 336
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	8, 109, 112, 121, 286
Fsp4HI	GCNGC	5 cut(s)	8, 109, 112, 121, 286
FspBI	CTAG	2 cut(s)	93, 333
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	5 cut(s)	8, 109, 112, 121, 286
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	16, 108, 341
HapII	CCGG	2 cut(s)	75, 321
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	38, 191, 319, 340
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	2 cut(s)	75, 321
Hpy188III	TCNNGA	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	173, 284
HpyCH4III	ACNGT	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 35, 55, 117, 120, 325, 435
HpyF3I	CTNAG	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	38, 191, 319, 340
HspAI	GCGC	1 cut(s)	305
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	3 cut(s)	88, 102, 334
Lsp1109I	GCAGC	2 cut(s)	107, 272
MaeI	CTAG	2 cut(s)	93, 333
MboII	GAAGA	6 cut(s)	232, 235, 283, 286, 301, 311
MluCI	AATT	4 cut(s)	51, 143, 201, 421
MlyI	GAGTC	1 cut(s)	425
MslI	CAYNNNNRTG	2 cut(s)	192, 264
MspI	CCGG	2 cut(s)	75, 321
MspR9I	CCNGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	7 cut(s)	13, 35, 55, 117, 120, 325, 435
NciI	CCSGG	1 cut(s)	321
NlaIII	CATG	4 cut(s)	38, 191, 319, 340
NlaIV	GGNNCC	2 cut(s)	107, 348
NmeAIII	GCCGAG	2 cut(s)	140, 367
NspI	RCATGY	2 cut(s)	38, 319
PaeI	GCATGC	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PkrI	GCNGC	5 cut(s)	9, 110, 113, 122, 287
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	107, 348
PspPI	GGNCC	3 cut(s)	15, 106, 347
PspXI	VCTCGAGB	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	192, 264
SapI	GCTCTTC	1 cut(s)	314
SatI	GCNGC	5 cut(s)	8, 109, 112, 121, 286
Sau96I	GGNCC	3 cut(s)	15, 106, 347
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	94, 367, 408, 431, 440
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	192, 264
SmlI	CTYRAG	2 cut(s)	137, 157
SmoI	CTYRAG	2 cut(s)	137, 157
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	4 cut(s)	51, 143, 201, 421
SsiI	CCGC	7 cut(s)	7, 56, 63, 103, 109, 112, 394
SspMI	CTAG	2 cut(s)	93, 333
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	4 cut(s)	41, 138, 312, 402
TasI	AATT	4 cut(s)	51, 143, 201, 421
TauI	GCSGC	3 cut(s)	10, 111, 114
TseI	GCWGC	2 cut(s)	120, 285
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	2 cut(s)	143, 421
XceI	RCATGY	2 cut(s)	38, 319
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	2 cut(s)	93, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.