Rroxscaffold_3G00260660

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
55035124 .. 55037391
2268 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00260660.1

Sequence Viewer

Length: 498 bp
ATGAAGAGGGTGGGCAGGCAGGGGCGTAGCCACTCACAGGGCTACTTGGGCTATAGCCCAAGGGAGAATTTCGCCCAAAATGCGTCAAGTATGGGCTCATGTATGATCGATGGTCCCGACATTTCAAGTCTTTATTGGCCAAATCCTGGTTATAGTGTGTTTGACATTGGTAGAACAAATTATAACGATAGCAGAATGCTGTTTTTGATGATTTGGGTCGTTTTTTGTCCAAAGGATCTACGGCGGTTTCGTGCAAGTGACATCGGTTTGGGGCCGAAAAGGCGGTTGACTATAGATTATGATGGAAATTTGAGACTTTATAGTCTCAATTCAACGAGGTTTTGGGTGGCGACTTGGGAAGCTCTCATTCGAGGTGTAGGGTTCATGGGATTTGTGGGAGAAATGGGATTTGTGTTTATACACCAGGGCCCAAATGTTCATGTCCTCCTGGCTATGAGGTGTTGGATAAAACTAACGGAACAAAGGTTGCATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

165

Amino Acids

18.99

Weight (kDa)

9.81

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AasI GACNNNNNNGTC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 2 cut(s) 244, 283
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 67, 307
AfiI CCNNNNNNNGG 2 cut(s) 37, 146
AgsI TTSAA 2 cut(s) 126, 333
AjnI CCWGG 3 cut(s) 145, 423, 447
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 307, 329
AlwI GGATC 1 cut(s) 243
AoxI GGCC 3 cut(s) 137, 272, 427
ApaI GGGCCC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 67, 307
AspS9I GGNCC 4 cut(s) 113, 272, 427, 428
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 139
BanII GRGCYC 2 cut(s) 98, 431
BccI CCATC 2 cut(s) 104, 296
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 3 cut(s) 147, 425, 449
BcoDI GTCTC 2 cut(s) 307, 329
BfmI CTRYAG 2 cut(s) 52, 291
BglI GCCNNNNNGGC 1 cut(s) 280
Bme1390I CCNGG 3 cut(s) 147, 425, 449
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 4 cut(s) 113, 272, 427, 428
BmiI GGNNCC 3 cut(s) 115, 273, 429
BmrFI CCNGG 3 cut(s) 147, 425, 449
Bsa29I ATCGAT 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 59, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 146
BseBI CCWGG 3 cut(s) 147, 425, 449
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 59, 424
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 37, 146
BseSI GKGCMC 1 cut(s) 431
BshFI GGCC 3 cut(s) 139, 274, 429
BshVI ATCGAT 1 cut(s) 108
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 37, 146
BsmAI GTCTC 2 cut(s) 307, 329
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 139, 274, 429
Bsp120I GGGCCC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 98, 431
Bsp143I GATC 2 cut(s) 105, 235
BspACI CCGC 2 cut(s) 244, 283
BspANI GGCC 3 cut(s) 139, 274, 429
BspDI ATCGAT 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 115, 273, 429
BspPI GGATC 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 59, 424
BssMI GATC 2 cut(s) 105, 235
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 3 cut(s) 147, 425, 449
BstC8I GCNNGC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 2 cut(s) 108, 238
BstMAI GTCTC 2 cut(s) 307, 329
BstMBI GATC 2 cut(s) 105, 235
BstMWI GCNNNNNNNGC 3 cut(s) 48, 80, 280
BstNI CCWGG 3 cut(s) 147, 425, 449
BstSCI CCNGG 3 cut(s) 145, 423, 447
BstSFI CTRYAG 2 cut(s) 52, 291
BstSLI GKGCMC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 139, 274, 429
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 1 cut(s) 490
Cac8I GCNNGC 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 113, 272, 427, 428
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 1 cut(s) 72
CviAII CATG 3 cut(s) 99, 385, 440
DpnI GATC 2 cut(s) 107, 237
DpnII GATC 2 cut(s) 105, 235
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 98, 431
Eco47I GGWCC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 145, 423, 447
EcoT14I CCWWGG 1 cut(s) 59
EcoT38I GRGCYC 2 cut(s) 98, 431
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 3 cut(s) 102, 388, 443
FaqI GGGAC 1 cut(s) 99
FatI CATG 3 cut(s) 98, 384, 439
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 2 cut(s) 98, 431
HaeIII GGCC 3 cut(s) 139, 274, 429
HgaI GACGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 102, 388, 443
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 254, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 80, 280
Hsp92II CATG 3 cut(s) 102, 388, 443
Kzo9I GATC 2 cut(s) 105, 235
LpnPI CCDG 8 cut(s) 5, 23, 132, 159, 410, 434, 437, 461
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 107, 237
MboI GATC 2 cut(s) 105, 235
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 98, 431
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 4 cut(s) 67, 178, 307, 328
MluNI TGGCCA 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 4 cut(s) 330, 365, 450, 455
Mox20I TGGCCA 1 cut(s) 139
MscI TGGCCA 1 cut(s) 139
Msp20I TGGCCA 1 cut(s) 139
MspR9I CCNGG 3 cut(s) 147, 425, 449
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 3 cut(s) 147, 425, 449
MwoI GCNNNNNNNGC 3 cut(s) 48, 80, 280
NdeII GATC 2 cut(s) 105, 235
NlaIII CATG 3 cut(s) 102, 388, 443
NlaIV GGNNCC 3 cut(s) 115, 273, 429
NmuCI GTSAC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 247
PctI GAATGC 1 cut(s) 201
PflMI CCANNNNNTGG 1 cut(s) 146
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 145, 423, 447
PspGI CCWGG 3 cut(s) 145, 423, 447
PspN4I GGNNCC 3 cut(s) 115, 273, 429
PspOMI GGGCCC 1 cut(s) 427
PspPI GGNCC 4 cut(s) 113, 272, 427, 428
PsuI RGATCY 1 cut(s) 235
Sau3AI GATC 2 cut(s) 105, 235
Sau96I GGNCC 4 cut(s) 113, 272, 427, 428
ScrFI CCNGG 3 cut(s) 147, 425, 449
SduI GDGCHC 2 cut(s) 98, 431
SetI ASST 5 cut(s) 341, 364, 376, 461, 488
SfcI CTRYAG 2 cut(s) 52, 291
SinI GGWCC 1 cut(s) 113
Sse9I AATT 4 cut(s) 67, 178, 307, 328
SsiI CCGC 2 cut(s) 244, 283
StyD4I CCNGG 3 cut(s) 145, 423, 447
StyI CCWWGG 1 cut(s) 59
TaqI TCGA 2 cut(s) 108, 370
TasI AATT 4 cut(s) 67, 178, 307, 328
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 17, 373, 428
TspGWI ACGGA 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 67, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.