Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58050149 .. 58050832

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAAAATCCGAAGAGAAGGCTCGGTTGGGGATAGGAGCAGAACTTCTAGCTTTGTCGGTGGAGATGGTGGAAAAGAGATTAGTGGACATGTTGGCAATGCGGGCATTGATCAGCTGTATCCCGATTCGGATGACGAAAATATTGCTTAGATTGAAGAGCTGCGGTGCCCGGGGGAAGAAGTGCAAACATGTTTCGGGGTTGCGAAGTAGTCGAGAGTACTATACTAGTGATCAAGAGGCACTGGGTGAAGGCACTTATGGTGAAGTTGTTGTGGACAAGGATGATGATATTCTTATGGTTATGGAGTATATGGACTATGAGCTCAAGTTTCTAATGGAATCGATGGAGCGGCGATTTAGTATAGGCGAAGTTAAATACTTGGTGAAAAGGTTGTTGGAGGGTGTAAAGTATCTTCATGACAATTGGGTTCTTCACAGAGATCCGAAAACTTCAAACATGCTTTTGAATAAGGAGGGTGAATTGAAAATATGTGACCTTGGGTGTCACGCCGGTATGGGAGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

176

Amino Acids

20.02

Weight (kDa)

7.62

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	91 - 169	5.2e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	91 - 169	1e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	3 cut(s)	103, 165, 352
AclWI	GGATC	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	90, 190
AgsI	TTSAA	4 cut(s)	157, 456, 469, 487
AhlI	ACTAGT	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 380, 412
AluBI	AGCT	4 cut(s)	53, 117, 162, 325
AluI	AGCT	4 cut(s)	53, 117, 162, 325
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	162
AsuC2I	CCSGG	2 cut(s)	172, 173
AsuHPI	GGTGA	4 cut(s)	260, 275, 397, 491
AvaI	CYCGRG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	61, 340
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	2 cut(s)	111, 232
BcnI	CCSGG	2 cut(s)	172, 173
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	50, 228
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	163, 353
BlsI	GCNGC	2 cut(s)	164, 354
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	172, 173
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	172, 173
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	172, 173
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	171, 172, 499
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	171, 172, 499
BseGI	GGATG	2 cut(s)	138, 289
BseMI	GCAATG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	172, 513
BslFI	GGGAC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	172, 327
Bsp143I	GATC	3 cut(s)	111, 232, 442
BspACI	CCGC	3 cut(s)	103, 165, 352
BspDI	ATCGAT	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	171, 172, 499
BssMI	GATC	3 cut(s)	111, 232, 442
BssT1I	CCWWGG	1 cut(s)	499
Bst6I	CTCTTC	2 cut(s)	9, 152
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	138, 289
BstKTI	GATC	3 cut(s)	114, 235, 445
BstMBI	GATC	3 cut(s)	111, 232, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	3 cut(s)	94, 194, 463
BstSCI	CCNGG	2 cut(s)	170, 171
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu15I	ATCGAT	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	138, 289
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	512
Cfr9I	CCCGGG	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	91, 191, 419, 460
CviJI	RGCY	5 cut(s)	23, 53, 117, 162, 325
CviKI_1	RGCY	5 cut(s)	23, 53, 117, 162, 325
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	113, 234, 444
DpnII	GATC	3 cut(s)	111, 232, 442
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	2 cut(s)	9, 152
EarI	CTCTTC	2 cut(s)	9, 152
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	4 cut(s)	94, 194, 422, 463
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	4 cut(s)	90, 190, 418, 459
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	111, 232
Fnu4HI	GCNGC	2 cut(s)	163, 353
FokI	GGATG	2 cut(s)	145, 296
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	163, 353
FspBI	CTAG	2 cut(s)	50, 228
GluI	GCNGC	2 cut(s)	163, 353
HapII	CCGG	2 cut(s)	172, 513
Hin1II	CATG	4 cut(s)	94, 194, 422, 463
HinfI	GANTC	3 cut(s)	127, 341, 522
HpaII	CCGG	2 cut(s)	172, 513
HphI	GGTGA	4 cut(s)	260, 275, 397, 491
Hpy166II	GTNNAC	2 cut(s)	88, 277
Hpy188I	TCNGA	3 cut(s)	13, 132, 447
Hpy188III	TCNNGA	4 cut(s)	124, 215, 236, 419
Hpy8I	GTNNAC	2 cut(s)	88, 277
HpyAV	CCTTC	2 cut(s)	13, 245
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	94, 194, 422, 463
Ksp22I	TGATCA	2 cut(s)	111, 232
Kzo9I	GATC	3 cut(s)	111, 232, 442
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	38, 349
LpnPI	CCDG	3 cut(s)	185, 230, 526
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	50, 228
MaeIII	GTNAC	2 cut(s)	494, 506
MalI	GATC	3 cut(s)	113, 234, 444
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	3 cut(s)	111, 232, 442
MboII	GAAGA	5 cut(s)	26, 169, 190, 407, 425
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	172, 327
MluCI	AATT	2 cut(s)	424, 482
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	232, 394, 469
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	172, 513
MspR9I	CCNGG	2 cut(s)	172, 173
MunI	CAATTG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	172, 173
NdeII	GATC	3 cut(s)	111, 232, 442
NlaIII	CATG	4 cut(s)	94, 194, 422, 463
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	494, 506
NspI	RCATGY	3 cut(s)	94, 194, 463
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	2 cut(s)	90, 190
PciSI	GCTCTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	127, 341
PkrI	GCNGC	2 cut(s)	164, 354
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PscI	ACATGT	2 cut(s)	90, 190
Psp124BI	GAGCTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	163, 353
Sau3AI	GATC	3 cut(s)	111, 232, 442
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	172, 173
SduI	GDGCHC	2 cut(s)	172, 327
SetI	ASST	6 cut(s)	55, 119, 164, 327, 395, 501
SmaI	CCCGGG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	2 cut(s)	424, 482
SsiI	CCGC	3 cut(s)	103, 165, 352
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	2 cut(s)	50, 228
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	170, 171
StyI	CCWWGG	1 cut(s)	499
TaqI	TCGA	2 cut(s)	214, 344
TasI	AATT	2 cut(s)	424, 482
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	127, 341
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	494, 506
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	2 cut(s)	494, 506
TspDTI	ATGAA	1 cut(s)	407
TspMI	CCCGGG	1 cut(s)	171
TspRI	CASTG	1 cut(s)	249
XceI	RCATGY	3 cut(s)	94, 194, 463
XmaI	CCCGGG	1 cut(s)	171
XspI	CTAG	2 cut(s)	50, 228
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.