Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58429086 .. 58432630

Gene Structure 3545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAATTGCCCAGATTGTCCTCGTGCTTTTATGAGTTTTACATTGACAGGTCCTTTGTTCTGTCGCACTCTTCCTTCGCCAACATCCTCTCCTTTTCTCTGTGACCGTCTCACCAATTCTTCTCTCCCCTTAGCAATGGGTGACGCTTTTTGGAGGATTCTGATCTGGATCGTAATGATTTATAGCTTAGTCTTATCTCAGACATTCGATCTTACTTGCAACTATCGACAGATCACAATGCCGGCTGTACGCCTCTCATCCTCCATTCCAGGGTCTAAACAGTGTGATATAAGAACAAATCATGGAGCAAGTATCAGAGAAAAGATTTCCTTTGGAACAAATCATGAAGAAGTGGGTGAAGGTGTTAGTGCTAGTGTGTACAGAGCACTCTGCGTACCACTTAATGAGATAGTAGCTATCAAGGTTCTTGATCTGGAAAAATGCAATAATTACCTGACTTCTTTAGCAAGAAGTCCATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCCCGCGCAGGTTTCGAACCCTGCTCCTATGGAAGGAAAACGCAGGAAGATGATACAACTACTTGATCAGCTTGTGTTCGGGGTTGCTTCTCTCAGTTGCTTCCAACAACCGCTTCCGAAGAACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

218

Amino Acids

24.2

Weight (kDa)

9.03

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccII	CGCG	1 cut(s)	533
AciI	CCGC	3 cut(s)	527, 531, 638
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	3 cut(s)	249, 380, 396
AfiI	CCNNNNNNNGG	2 cut(s)	270, 560
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	3 cut(s)	186, 416, 598
AluI	AGCT	3 cut(s)	186, 416, 598
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	113, 491
AlwI	GGATC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	103, 152, 368
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	113, 491
BfaI	CTAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	542
BsaBI	GATNNNNATC	2 cut(s)	161, 167
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 560
Bse118I	RCCGGY	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	2 cut(s)	161, 167
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	83, 257
BseJI	GATNNNNATC	2 cut(s)	161, 167
BseLI	CCNNNNNNNGG	2 cut(s)	270, 560
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	212, 634
Bsh1236I	CGCG	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	270, 560
BsmAI	GTCTC	2 cut(s)	113, 491
BsmBI	CGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
BspACI	CCGC	3 cut(s)	527, 531, 638
BspCNI	CTCAG	2 cut(s)	211, 633
BspFNI	CGCG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	107, 282
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	243, 527, 531
BstDEI	CTNAG	4 cut(s)	130, 187, 198, 620
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	83, 257
BstFNI	CGCG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	6 cut(s)	165, 171, 211, 234, 433, 595
BstMAI	GTCTC	2 cut(s)	113, 491
BstMBI	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	83, 257
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	243, 527, 531
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	248, 379, 395
CviAII	CATG	2 cut(s)	302, 344
CviJI	RGCY	5 cut(s)	186, 245, 416, 520, 598
CviKI_1	RGCY	5 cut(s)	186, 245, 416, 520, 598
CviQI	GTAC	3 cut(s)	248, 379, 395
DdeI	CTNAG	4 cut(s)	130, 187, 198, 620
DpnI	GATC	6 cut(s)	164, 170, 210, 233, 432, 594
DpnII	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	305, 347
FaiI	YATR	8 cut(s)	32, 183, 290, 303, 345, 478, 480, 557
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	2 cut(s)	301, 343
FauI	CCCGC	2 cut(s)	534, 538
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	2 cut(s)	70, 244
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	534
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	2 cut(s)	305, 347
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	103, 152, 368
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	5 cut(s)	162, 201, 317, 485, 645
Hpy188III	TCNNGA	4 cut(s)	166, 344, 428, 434
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	84, 353, 554
HpyCH4III	ACNGT	2 cut(s)	107, 282
HpyCH4V	TGCA	2 cut(s)	219, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	4 cut(s)	130, 187, 198, 620
Hsp92II	CATG	2 cut(s)	305, 347
HspAI	GCGC	1 cut(s)	533
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
LmnI	GCTCC	2 cut(s)	305, 556
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	101, 140
MalI	GATC	6 cut(s)	164, 170, 210, 233, 432, 594
MboI	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
MboII	GAAGA	4 cut(s)	62, 111, 359, 586
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	3 cut(s)	4, 115, 448
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	5 cut(s)	30, 97, 147, 263, 271
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	3 cut(s)	402, 492, 655
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	526
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	305, 347
NmuCI	GTSAC	2 cut(s)	101, 140
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
RsaI	GTAC	3 cut(s)	249, 380, 396
RsaNI	GTAC	3 cut(s)	248, 379, 395
SaqAI	TTAA	3 cut(s)	402, 492, 655
Sau3AI	GATC	6 cut(s)	162, 168, 208, 231, 430, 592
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	9 cut(s)	52, 188, 364, 418, 426, 456, 540, 600, 654
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	4, 115, 448
SsiI	CCGC	3 cut(s)	527, 531, 638
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	107, 282
TaqI	TCGA	3 cut(s)	207, 226, 542
TasI	AATT	3 cut(s)	4, 115, 448
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	3 cut(s)	402, 492, 655
Tru9I	TTAA	3 cut(s)	402, 492, 655
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	2 cut(s)	101, 140
Tsp45I	GTSAC	2 cut(s)	101, 140
TspDTI	ATGAA	2 cut(s)	17, 360
TspRI	CASTG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	558
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.