Rroxscaffold_3G00265590

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
58987504 .. 59002268
14765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265590.1

Sequence Viewer

Length: 594 bp
ATGATTGTCTTTCTTGATTTTGATCTGAGGTCCCGATCAAGACGTTTCAGGGCGTACAAACAGGCTGATTTGCACAAGAACGAGCGTCTTTGTTGTGCTGCGGGGGCAGCAGGAGTGCGACGATGCTGCAGGGGCAGTAGGCGGCACATGGGTGCTCAAGGGCTGCAGGGGCAGCGTACGAAGGTCAAGAAAGATCTCATTCAGATTCAAAGACTCACAACTCTTGTCCAATCAGCCTCCAAAACTCATGCAAAGTCTTTGCTTTCCAGCCACAACAGAGAAGAGCCTCTTGCAGACACCGACACCTTGGCTAGTTTGAGAATTAGCAGCAATGGCAATCTTGAGCTTGTAGATGGGCAGCAGATTCTTGTGTGGTCTACCAATGTTACTATGATTCAGGTTTCATCATCTAATACTAGTTCAGTTGCTGCAGTTCTTTCGGACGATGGAAATTTTGTTGTCAAACATGTTATTGGAGTTGGTCAATCAATATGGCGAGCTTTGATCATCCTGGTGACACCTTGCTACCGACTCATTTCTTGGGATTTGATACTAAATCTGGTACGAAGAATGTCCCGACTTCCGGAGAAGTAA

Protein Analysis

197

Amino Acids

22.03

Weight (kDa)

10.38

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 92 - 166 5.3e-12 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 583
AciI CCGC 2 cut(s) 101, 142
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 3 cut(s) 56, 178, 564
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 1 cut(s) 510
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 2 cut(s) 346, 500
AluI AGCT 2 cut(s) 346, 500
Alw21I GWGCWC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 583
ApeKI GCWGC 8 cut(s) 98, 107, 126, 163, 172, 327, 358, 428
ApoI RAATTY 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 8 cut(s) 85, 113, 119, 150, 184, 339, 370, 415
BccI CCATC 2 cut(s) 347, 440
BcgI CGANNNNNNTGC 4 cut(s) 108, 142, 420, 454
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 504
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 2 cut(s) 312, 417
BfmI CTRYAG 3 cut(s) 127, 164, 429
BglII AGATCT 1 cut(s) 193
BisI GCNGC 9 cut(s) 99, 108, 127, 143, 164, 173, 328, 359, 429
BlsI GCNGC 9 cut(s) 100, 109, 128, 144, 165, 174, 329, 360, 430
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 141, 362
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 507
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 8 cut(s) 85, 113, 119, 150, 184, 339, 370, 415
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 584
BsiWI CGTACG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 16, 559
BslI CCNNNNNNNGG 1 cut(s) 583
BsmFI GGGAC 2 cut(s) 16, 559
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 583
Bsp143I GATC 4 cut(s) 22, 35, 193, 504
BspACI CCGC 2 cut(s) 101, 142
BspCNI CTCAG 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 3 cut(s) 131, 168, 433
BspQI GCTCTTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 4 cut(s) 22, 35, 193, 504
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 507
BstKTI GATC 4 cut(s) 25, 38, 196, 507
BstMBI GATC 4 cut(s) 22, 35, 193, 504
BstMWI GCNNNNNNNGC 6 cut(s) 104, 107, 132, 169, 172, 333
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 3 cut(s) 127, 164, 429
BstV1I GCAGC 8 cut(s) 85, 113, 119, 150, 184, 339, 370, 415
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 498
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 55, 177, 563
CviAII CATG 3 cut(s) 148, 248, 467
CviJI RGCY 8 cut(s) 65, 163, 236, 270, 286, 311, 346, 500
CviKI_1 RGCY 8 cut(s) 65, 163, 236, 270, 286, 311, 346, 500
CviQI GTAC 3 cut(s) 55, 177, 563
DdeI CTNAG 1 cut(s) 26
DpnI GATC 4 cut(s) 24, 37, 195, 506
DpnII GATC 4 cut(s) 22, 35, 193, 504
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 151, 251, 470
FaiI YATR 5 cut(s) 149, 249, 392, 468, 493
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 2 cut(s) 16, 559
FatI CATG 3 cut(s) 147, 247, 466
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 9 cut(s) 99, 108, 127, 143, 164, 173, 328, 359, 429
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 9 cut(s) 99, 108, 127, 143, 164, 173, 328, 359, 429
FspBI CTAG 2 cut(s) 312, 417
GluI GCNGC 9 cut(s) 99, 108, 127, 143, 164, 173, 328, 359, 429
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 151, 251, 470
HinfI GANTC 5 cut(s) 205, 213, 364, 394, 531
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 3 cut(s) 27, 204, 442
Hpy188III TCNNGA 7 cut(s) 14, 33, 39, 187, 341, 576, 584
Hpy8I GTNNAC 1 cut(s) 378
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 6 cut(s) 73, 129, 166, 251, 293, 431
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 107, 132, 169, 172, 333
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 151, 251, 470
Kpn2I TCCGGA 1 cut(s) 583
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 4 cut(s) 22, 35, 193, 504
LguI GCTCTTC 1 cut(s) 276
Lsp1109I GCAGC 8 cut(s) 85, 113, 119, 150, 184, 339, 370, 415
LweI GCATC 1 cut(s) 113
MaeI CTAG 2 cut(s) 312, 417
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 385, 514
MalI GATC 4 cut(s) 24, 37, 195, 506
MboI GATC 4 cut(s) 22, 35, 193, 504
MboII GAAGA 2 cut(s) 293, 579
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 321, 451
MlyI GAGTC 2 cut(s) 207, 525
MnlI CCTC 3 cut(s) 21, 247, 297
MroI TCCGGA 1 cut(s) 583
MslI CAYNNNNRTG 2 cut(s) 150, 512
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 512
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 6 cut(s) 104, 107, 132, 169, 172, 333
NdeII GATC 4 cut(s) 22, 35, 193, 504
NlaIII CATG 3 cut(s) 151, 251, 470
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 150
PciI ACATGT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 205, 364, 394
Pfl23II CGTACG 1 cut(s) 176
PkrI GCNGC 9 cut(s) 100, 109, 128, 144, 165, 174, 329, 360, 430
PleI GAGTC 2 cut(s) 207, 525
PpsI GAGTC 2 cut(s) 207, 525
PpuMI RGGWCCY 1 cut(s) 30
PscI ACATGT 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspLI CGTACG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 30
PspPPI RGGWCCY 1 cut(s) 30
PstI CTGCAG 3 cut(s) 131, 168, 433
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 56, 178, 564
RsaNI GTAC 3 cut(s) 55, 177, 563
RseI CAYNNNNRTG 2 cut(s) 150, 512
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 9 cut(s) 99, 108, 127, 143, 164, 173, 328, 359, 429
Sau3AI GATC 4 cut(s) 22, 35, 193, 504
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 2 cut(s) 207, 525
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 32, 46, 186, 308, 348, 402, 502, 523
SfaNI GCATC 1 cut(s) 113
SfcI CTRYAG 3 cut(s) 127, 164, 429
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 150, 512
SmlI CTYRAG 2 cut(s) 156, 341
SmoI CTYRAG 2 cut(s) 156, 341
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 2 cut(s) 321, 451
SsiI CCGC 2 cut(s) 101, 142
SspMI CTAG 2 cut(s) 312, 417
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 46
TasI AATT 2 cut(s) 321, 451
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 3 cut(s) 205, 364, 394
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 8 cut(s) 98, 107, 126, 163, 172, 327, 358, 428
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 30
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 2 cut(s) 312, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.