Rroxscaffold_3G00265660

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
59086799 .. 59087416
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265660.1

Sequence Viewer

Length: 291 bp
ATGAACATAAACTTCTATTTTTCTTCTCCAAAGGCGTTTAGAGTTAAATCTCATCCTTCGGTTGATGATTACTTGAAGGTTTGGAAGGAAGAGGCGTCACTTGCAGATGATGTTGAAGTAGTCTCTTTGCCGAGGGAAAAGCCGATTAAGAAAGCGCCGTTCGTGCCGATTCTTGGTTTTCTTGCTGCTCCTCCCATGGAAATGGAAGCTGAGAAGAGGCTTGAAGCTGTTCAATTCCTTGAGAATGTTACCGTGGTGGTAACAGCTGAACCAATCTCTCGTAACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

96

Amino Acids

10.86

Weight (kDa)

5.39

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 4 cut(s) 76, 116, 224, 233
AluBI AGCT 3 cut(s) 209, 227, 266
AluI AGCT 3 cut(s) 209, 227, 266
Alw26I GTCTC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 131, 195, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 131, 195, 252
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 131, 195, 252
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 84, 209
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 2 cut(s) 195, 252
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 101, 163
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 202
BtgI CCRYGG 2 cut(s) 195, 252
BtsCI GGATG 1 cut(s) 52
CfoI GCGC 1 cut(s) 157
CseI GACGC 1 cut(s) 84
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 142, 209, 220, 227, 266
CviKI_1 RGCY 5 cut(s) 142, 209, 220, 227, 266
DdeI CTNAG 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 84, 209
EarI CTCTTC 2 cut(s) 84, 209
Eco130I CCWWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 199
FaiI YATR 3 cut(s) 8, 197, 289
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 158
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 66, 70, 79
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 163
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 1 cut(s) 172
MaeIII GTNAC 4 cut(s) 96, 247, 259, 281
MboII GAAGA 3 cut(s) 15, 101, 226
MluCI AATT 1 cut(s) 233
MnlI CCTC 4 cut(s) 85, 126, 201, 210
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 45, 147
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 101, 163
NcoI CCATGG 1 cut(s) 195
NlaIII CATG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 45, 147
SatI GCNGC 1 cut(s) 186
SetI ASST 5 cut(s) 81, 211, 229, 268, 288
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 233
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 253
TasI AATT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 45, 147
Tru9I TTAA 2 cut(s) 45, 147
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.