Rroxscaffold_3G00265670

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Reverse (-)
59087494 .. 59089082
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265670.1

Sequence Viewer

Length: 1038 bp
ATGGATCCGTCTCTCGTTGACATTCCATTAATTGATACGAGCTTTTATGGTGAGAGTATTAGTGAATACAAGGAGGAGCTAAAGACAATTGGGTTCATGTTTGAATACAAGAAGCATGTGACTTCATTGGGAAGCATTTCAAGTATCTCGGCAGCTTCATCCTCTTTAACTAGAGGAAATGTGCATTCCATTCTCGCGTTTCATCGTGTTTTTAAGGGACAAACTTCTTCCTCCGGCCAATTTTATCTCTCGCTATTAAAAAGGGAACTCGGTGAAGACTTCCGTTGGCTACATGTCTCCGCCACCATCTTGCATAACTTCTTGGACACCCGAGGTTGTTACCTTAATGCTCAACCGTATGGCTCTATCCAAATCATCCGACAAACTTGTCAATGCACCGAAAGGATTCAAGTGCCCGAAGACAAGTATTGGTTACAAGTGTCCAGGGAATGTCTCTTGTTTCATCACGAATGGGGTTGCATTCTTCGTGTCGTCAATGGTCTTCTTGTGATTGATCATGAATTGTATGGGAGCAACATTTTCTCGTACGTAAATGAACCGAGAAAGATTGGTGTGGCGGTTGATTTTGAAGAGGCTGCAAAAGTATTTGCTCGATATTTCGTGCACTATGCATCATCGCCTTCCATCACCAAGGAAAATGAGAAAGGTTACGCGTTTCTTGATAATTTCGATTTCATGATGAAAGTTTCTCAACCATGGATAAAGACTCATGCTGGTTATAGGTCTCCCAAAGAGTCTTTGTTTTTTGATTCCAAGTTTGGCTTATATTTGAAGCGGATTGATGGGCCATTCATTGATGAAGAATTCTATGGTACTAAGATTGCATCTTACAAAAAAAAGTCGTCTCGTATTGGGGTTATTGTTGTAGCCGAAAAGGGGTGTCCCTTGATTGCCGGCCACCTTGATATTCATAATGAGACCGAAGCCTTTGTTCGATTGTATAGTTACTTGAGTGCGTTCCGGTGGGAGCCGTACACCGATGCAGCTCGAAGGATCCGGATTCCAAAAAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

345

Amino Acids

39.71

Weight (kDa)

8.1

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 387
AccII CGCG 2 cut(s) 197, 674
AccIII TCCGGA 1 cut(s) 1017
AciI CCGC 3 cut(s) 300, 578, 796
AclWI GGATC 3 cut(s) 12, 1009, 1022
AcoI YGGCCR 2 cut(s) 235, 916
AcsI RAATTY 1 cut(s) 824
AfaI GTAC 3 cut(s) 548, 835, 995
AfiI CCNNNNNNNGG 1 cut(s) 897
AflIII ACRYGT 2 cut(s) 292, 672
AgsI TTSAA 5 cut(s) 104, 141, 410, 590, 793
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 42, 79, 155, 1007
AluI AGCT 4 cut(s) 42, 79, 155, 1007
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 6 cut(s) 15, 301, 458, 750, 870, 932
Alw44I GTGCAC 1 cut(s) 623
AlwI GGATC 3 cut(s) 12, 1009, 1022
Ama87I CYCGRG 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 1017
AoxI GGCC 3 cut(s) 235, 806, 916
ApaLI GTGCAC 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 152, 596, 1004
ApoI RAATTY 1 cut(s) 824
AseI ATTAAT 1 cut(s) 29
Asp700I GAANNNNTTC 2 cut(s) 136, 405
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 3 cut(s) 62, 284, 640
AvaI CYCGRG 1 cut(s) 330
BaeGI GKGCMC 2 cut(s) 417, 627
BamHI GGATCC 2 cut(s) 4, 1014
BbsI GAAGAC 3 cut(s) 282, 426, 494
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 164, 583, 1016
BccI CCATC 3 cut(s) 314, 653, 797
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 6 cut(s) 15, 301, 458, 750, 870, 932
BfaI CTAG 1 cut(s) 171
BisI GCNGC 3 cut(s) 153, 597, 1005
BlsI GCNGC 3 cut(s) 154, 598, 1006
Bme1390I CCNGG 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 3 cut(s) 6, 990, 1016
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 3 cut(s) 641, 854, 991
BpiI GAAGAC 3 cut(s) 282, 426, 494
BpuEI CTTGAG 1 cut(s) 991
BsaAI YACGTR 1 cut(s) 550
BsaI GGTCTC 2 cut(s) 750, 932
BsaJI CCNNGG 4 cut(s) 331, 444, 651, 716
BsaWI WCCGGW 2 cut(s) 981, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse118I RCCGGY 1 cut(s) 914
BseAI TCCGGA 1 cut(s) 1017
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 4 cut(s) 331, 444, 651, 716
BseGI GGATG 2 cut(s) 158, 375
BseLI CCNNNNNNNGG 1 cut(s) 897
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 2 cut(s) 417, 627
BseXI GCAGC 3 cut(s) 164, 583, 1016
Bsh1236I CGCG 2 cut(s) 197, 674
BshFI GGCC 3 cut(s) 237, 808, 918
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 4 cut(s) 234, 915, 982, 1018
BsiWI CGTACG 1 cut(s) 546
BslFI GGGAC 2 cut(s) 231, 888
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 6 cut(s) 15, 301, 458, 750, 870, 932
BsmBI CGTCTC 2 cut(s) 15, 870
BsmFI GGGAC 2 cut(s) 231, 888
BsmI GAATGC 2 cut(s) 184, 480
BsnI GGCC 3 cut(s) 237, 808, 918
Bso31I GGTCTC 2 cut(s) 750, 932
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 417, 627
Bsp13I TCCGGA 1 cut(s) 1017
Bsp143I GATC 3 cut(s) 4, 514, 1014
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 3 cut(s) 300, 578, 796
BspANI GGCC 3 cut(s) 237, 808, 918
BspEI TCCGGA 1 cut(s) 1017
BspFNI CGCG 2 cut(s) 197, 674
BspHI TCATGA 2 cut(s) 517, 696
BspLI GGNNCC 3 cut(s) 6, 990, 1016
BspPI GGATC 3 cut(s) 12, 1009, 1022
BspTNI GGTCTC 2 cut(s) 750, 932
BsrFI RCCGGY 1 cut(s) 914
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 4 cut(s) 331, 444, 651, 716
BssMI GATC 3 cut(s) 4, 514, 1014
BssT1I CCWWGG 2 cut(s) 651, 716
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 916
BstDEI CTNAG 1 cut(s) 837
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 2 cut(s) 158, 375
BstFNI CGCG 2 cut(s) 197, 674
BstKTI GATC 3 cut(s) 7, 517, 1017
BstMAI GTCTC 6 cut(s) 15, 301, 458, 750, 870, 932
BstMBI GATC 3 cut(s) 4, 514, 1014
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 119, 296
BstSCI CCNGG 1 cut(s) 443
BstSLI GKGCMC 2 cut(s) 417, 627
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 2 cut(s) 197, 674
BstV1I GCAGC 3 cut(s) 164, 583, 1016
BstV2I GAAGAC 3 cut(s) 282, 426, 494
BstX2I RGATCY 2 cut(s) 4, 1014
BstYI RGATCY 2 cut(s) 4, 1014
BsuRI GGCC 3 cut(s) 237, 808, 918
BtgI CCRYGG 1 cut(s) 716
BtgZI GCGATG 1 cut(s) 621
BtsCI GGATG 2 cut(s) 158, 375
Cac8I GCNNGC 1 cut(s) 916
CciI TCATGA 2 cut(s) 517, 696
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 806
Csp6I GTAC 3 cut(s) 547, 834, 994
CviAII CATG 7 cut(s) 97, 116, 293, 518, 697, 717, 731
CviQI GTAC 3 cut(s) 547, 834, 994
DdeI CTNAG 1 cut(s) 837
DpnI GATC 3 cut(s) 6, 516, 1016
DpnII GATC 3 cut(s) 4, 514, 1014
DrdI GACNNNNNNGTC 1 cut(s) 387
DseDI GACNNNNNNGTC 1 cut(s) 387
EaeI YGGCCR 2 cut(s) 235, 916
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
EciI GGCGGA 1 cut(s) 289
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 651, 716
Eco31I GGTCTC 2 cut(s) 750, 932
Eco88I CYCGRG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 651, 716
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 651, 716
Esp3I CGTCTC 2 cut(s) 15, 870
FaeI CATG 7 cut(s) 100, 119, 296, 521, 700, 720, 734
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 231, 888
FatI CATG 7 cut(s) 96, 115, 292, 517, 696, 716, 730
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 153, 597, 1005
FokI GGATG 2 cut(s) 145, 362
Fsp4HI GCNGC 3 cut(s) 153, 597, 1005
FspBI CTAG 1 cut(s) 171
GluI GCNGC 3 cut(s) 153, 597, 1005
HaeIII GGCC 3 cut(s) 237, 808, 918
HapII CCGG 4 cut(s) 234, 915, 982, 1018
Hin1II CATG 7 cut(s) 100, 119, 296, 521, 700, 720, 734
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 5 cut(s) 406, 727, 755, 770, 1021
HpaII CCGG 4 cut(s) 234, 915, 982, 1018
HphI GGTGA 3 cut(s) 62, 284, 640
Hpy166II GTNNAC 3 cut(s) 19, 625, 996
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 5 cut(s) 467, 518, 680, 697, 1018
Hpy8I GTNNAC 3 cut(s) 19, 625, 996
HpyAV CCTTC 2 cut(s) 651, 1005
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 9 cut(s) 184, 313, 396, 480, 599, 625, 632, 845, 1004
HpyF3I CTNAG 1 cut(s) 837
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 7 cut(s) 100, 119, 296, 521, 700, 720, 734
Kpn2I TCCGGA 1 cut(s) 1017
KroI GCCGGC 1 cut(s) 914
KroNI GCCGGC 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 4, 514, 1014
LmnI GCTCC 3 cut(s) 76, 531, 988
LpnPI CCDG 7 cut(s) 247, 430, 457, 720, 928, 995, 1031
Lsp1109I GCAGC 3 cut(s) 164, 583, 1016
LweI GCATC 3 cut(s) 641, 854, 991
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 5 cut(s) 118, 338, 432, 668, 965
MalI GATC 3 cut(s) 6, 516, 1016
MboI GATC 3 cut(s) 4, 514, 1014
MboII GAAGA 7 cut(s) 219, 287, 431, 476, 494, 602, 833
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 2 cut(s) 4, 1014
MhlI GDGCHC 2 cut(s) 417, 627
MluCI AATT 6 cut(s) 30, 87, 239, 521, 685, 824
MluI ACGCGT 1 cut(s) 672
MlyI GAGTC 2 cut(s) 721, 764
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 6 cut(s) 67, 167, 172, 241, 326, 586
Mph1103I ATGCAT 1 cut(s) 634
MroI TCCGGA 1 cut(s) 1017
MroNI GCCGGC 1 cut(s) 914
MroXI GAANNNNTTC 2 cut(s) 136, 405
MseI TTAA 5 cut(s) 29, 167, 213, 257, 345
MspI CCGG 4 cut(s) 234, 915, 982, 1018
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 2 cut(s) 184, 480
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 2 cut(s) 197, 674
NaeI GCCGGC 1 cut(s) 916
NcoI CCATGG 1 cut(s) 716
NdeII GATC 3 cut(s) 4, 514, 1014
NgoMIV GCCGGC 1 cut(s) 914
NlaIII CATG 7 cut(s) 100, 119, 296, 521, 700, 720, 734
NlaIV GGNNCC 3 cut(s) 6, 990, 1016
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 2 cut(s) 119, 296
PagI TCATGA 2 cut(s) 517, 696
PciI ACATGT 1 cut(s) 292
PctI GAATGC 2 cut(s) 184, 480
PdiI GCCGGC 1 cut(s) 916
PdmI GAANNNNTTC 2 cut(s) 136, 405
PfeI GAWTC 3 cut(s) 406, 770, 1021
Pfl23II CGTACG 1 cut(s) 546
PkrI GCNGC 3 cut(s) 154, 598, 1006
PleI GAGTC 2 cut(s) 721, 763
PpsI GAGTC 2 cut(s) 721, 763
Ppu21I YACGTR 1 cut(s) 550
PscI ACATGT 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 3 cut(s) 6, 990, 1016
PspPI GGNCC 1 cut(s) 806
PsuI RGATCY 2 cut(s) 4, 1014
RsaI GTAC 3 cut(s) 548, 835, 995
RsaNI GTAC 3 cut(s) 547, 834, 994
SaqAI TTAA 5 cut(s) 29, 167, 213, 257, 345
SatI GCNGC 3 cut(s) 153, 597, 1005
Sau3AI GATC 3 cut(s) 4, 514, 1014
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 2 cut(s) 721, 764
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 2 cut(s) 417, 627
SfaNI GCATC 3 cut(s) 641, 854, 991
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
SnaBI TACGTA 1 cut(s) 550
Sse9I AATT 6 cut(s) 30, 87, 239, 521, 685, 824
SsiI CCGC 3 cut(s) 300, 578, 796
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 2 cut(s) 651, 716
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 552
TaqI TCGA 4 cut(s) 613, 690, 955, 1009
TaqII GACCGA 1 cut(s) 956
TasI AATT 6 cut(s) 30, 87, 239, 521, 685, 824
TfiI GAWTC 3 cut(s) 406, 770, 1021
Tru1I TTAA 5 cut(s) 29, 167, 213, 257, 345
Tru9I TTAA 5 cut(s) 29, 167, 213, 257, 345
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 152, 596, 1004
Tsp45I GTSAC 1 cut(s) 118
TspGWI ACGGA 1 cut(s) 272
VneI GTGCAC 1 cut(s) 623
VspI ATTAAT 1 cut(s) 29
XapI RAATTY 1 cut(s) 824
XceI RCATGY 2 cut(s) 119, 296
XmnI GAANNNNTTC 2 cut(s) 136, 405
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.