Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60527221 .. 60528709

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCGCTTCTTCCACTCCTTCTTCTTCTCCTTTTCTTTCTCACTACCCTCACTCTTCTTCTTGAACATGTCCCTCTACCGCTTCGATGCGGTCAAGACCGGAGCTGCAGTTGACACCTGGGCCTCCGGTTCGGGTCCGGGCGAAATCTCTTCCGAGTTGGGTCGCGAGTATAATGAAATTCTGGGCAGAGAAGTTTCAAAGACAGTATATAAAATCTTTGATGAGTATGAAGGGATTGAAGTGGCATGGAACCAAGTGAAGCTTTATGAGTTTTTGAGGAACCCCGAAGACCTTGAGAGCCTCTACCGCAAAATTCATCTACTCAAGACCTTAAAACATAATCACATCATTCTTTGGATCACATTTGGTGTGAAGGGGTGCAAAAATCCTTTCAAAAAGTTTGAGACCCCTATACCGAGGATCATTAGTGCATGGCCATTGGGCATATGCCCCTATGCTGATCAAAGGGGTTATGGAAATATGAAAAAGAAAAGTCTAATTGTAGACGTCAGCTTCCTCTATATTCTTCTGGAGCCAAAGCAAGGTCTAATTGTAGACGTCTTCCTTCTCTGTTTTCTTTTGGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

197

Amino Acids

22.86

Weight (kDa)

8.34

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	513, 564
AccI	GTMKAC	2 cut(s)	507, 558
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	82, 92, 310
AclWI	GGATC	2 cut(s)	368, 431
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	180, 315
AcyI	GRCGYC	2 cut(s)	510, 561
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	67, 201, 242, 397
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	107, 265, 516
AluI	AGCT	3 cut(s)	107, 265, 516
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	368, 431
AoxI	GGCC	2 cut(s)	123, 437
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	180, 315
AspS9I	GGNCC	2 cut(s)	123, 137
AsuC2I	CCSGG	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	297, 556
BbvI	GCAGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	121
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	121, 141
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	123, 137
BmiI	GGNNCC	4 cut(s)	138, 254, 284, 537
BmrFI	CCNGG	2 cut(s)	121, 141
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	297, 556
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	311, 317
BpuMI	CCSGG	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	510, 561
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	120, 419
BsaWI	WCCGGW	2 cut(s)	101, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	120, 419
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	125, 439
BsiSI	CCGG	3 cut(s)	102, 129, 140
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	125, 439
Bso31I	GGTCTC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	360, 423, 463
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	3 cut(s)	82, 92, 310
BspANI	GGCC	2 cut(s)	125, 439
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	4 cut(s)	138, 254, 284, 537
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	2 cut(s)	368, 431
BspTNI	GGTCTC	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	120, 419
BssMI	GATC	3 cut(s)	360, 423, 463
BssNI	GRCGYC	2 cut(s)	510, 561
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	62, 157
BstACI	GRCGYC	2 cut(s)	510, 561
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	363, 426, 466
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	3 cut(s)	360, 423, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	119, 139
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	297, 556
BsuRI	GGCC	2 cut(s)	125, 439
BtuMI	TCGCGA	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	123, 137
CviAII	CATG	3 cut(s)	70, 249, 435
CviJI	RGCY	7 cut(s)	107, 125, 265, 303, 439, 516, 538
CviKI_1	RGCY	7 cut(s)	107, 125, 265, 303, 439, 516, 538
DpnI	GATC	3 cut(s)	362, 425, 465
DpnII	GATC	3 cut(s)	360, 423, 463
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	2 cut(s)	62, 157
EarI	CTCTTC	2 cut(s)	62, 157
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	73, 252, 438
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	69, 248, 434
FauNDI	CATATG	1 cut(s)	449
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	2 cut(s)	507, 558
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	2 cut(s)	125, 439
HapII	CCGG	3 cut(s)	102, 129, 140
Hin1I	GRCGYC	2 cut(s)	510, 561
Hin1II	CATG	3 cut(s)	73, 252, 438
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	263
HpaII	CCGG	3 cut(s)	102, 129, 140
Hpy166II	GTNNAC	3 cut(s)	115, 508, 559
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	5 cut(s)	64, 97, 167, 328, 533
Hpy8I	GTNNAC	3 cut(s)	115, 508, 559
HpyAV	CCTTC	4 cut(s)	31, 227, 370, 578
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	510, 561
HpyCH4V	TGCA	3 cut(s)	110, 384, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	510, 561
Hsp92I	GRCGYC	2 cut(s)	510, 561
Hsp92II	CATG	3 cut(s)	73, 252, 438
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	360, 423, 463
LmnI	GCTCC	3 cut(s)	104, 535, 586
LpnPI	CCDG	7 cut(s)	106, 115, 133, 142, 153, 170, 518
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	510, 561
MalI	GATC	3 cut(s)	362, 425, 465
MboI	GATC	3 cut(s)	360, 423, 463
MboII	GAAGA	9 cut(s)	4, 16, 19, 49, 52, 144, 302, 521, 556
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	4 cut(s)	180, 315, 501, 552
MluNI	TGGCCA	1 cut(s)	439
MnlI	CCTC	7 cut(s)	61, 86, 136, 273, 314, 414, 530
Mox20I	TGGCCA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	439
MspI	CCGG	3 cut(s)	102, 129, 140
MspR9I	CCNGG	2 cut(s)	121, 141
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	3 cut(s)	360, 423, 463
NlaIII	CATG	3 cut(s)	73, 252, 438
NlaIV	GGNNCC	4 cut(s)	138, 254, 284, 537
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	1 cut(s)	73
PciI	ACATGT	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	138, 254, 284, 537
PspPI	GGNCC	2 cut(s)	123, 137
PstI	CTGCAG	1 cut(s)	112
RruI	TCGCGA	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	360, 423, 463
Sau96I	GGNCC	2 cut(s)	123, 137
ScrFI	CCNGG	2 cut(s)	121, 141
SetI	ASST	9 cut(s)	109, 122, 267, 297, 335, 513, 518, 550, 564
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	296, 326
SmoI	CTYRAG	2 cut(s)	296, 326
Sse9I	AATT	4 cut(s)	180, 315, 501, 552
SsiI	CCGC	3 cut(s)	82, 92, 310
StyD4I	CCNGG	2 cut(s)	119, 139
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	513, 564
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	180, 315, 501, 552
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	192, 246, 308, 500
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	180, 315
XceI	RCATGY	1 cut(s)	73
XmiI	GTMKAC	2 cut(s)	507, 558
ZraI	GACGTC	2 cut(s)	511, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.