Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65409370 .. 65413715

Gene Structure 4346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTGCCGTCGCCGCTCCTGTTTGATGACTTCTGCGACTTGTACACGTTCGCCGACTTGTCTTTTTCTGTTCAGACGACGTCGTCGACAGGCGCGGAACCACATGCTAGAGAACTGATATACTTGATTGTTGCAGAGTATGCCATTGGTGTGGAGCCATCAAAACAAGGTGATTATGCCATTGGTGTGGAGCCATCAAAACAAGGTGATGTATATAGTTATGGGATCCTTGTTCTGCAAATGTTAATGGGAAGAAGACCCACCGACGAAATGTTTAAAGACGGCTTCAATCTCCACAACTCGTTAAGGTTGCCATACCGGAAGACTTGTGCAGATTGTGGATCCTACTCTTCTTGCCATTTTACAAGAGACGACAACTGCAACAAGAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

5.25

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AatII	GACGTC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	14, 95
AclWI	GGATC	4 cut(s)	220, 233, 336, 349
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	4 cut(s)	220, 233, 336, 349
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	182, 218
BamHI	GGATCC	2 cut(s)	225, 341
BbsI	GAAGAC	2 cut(s)	262, 329
BccI	CCATC	2 cut(s)	166, 202
BceAI	ACGGC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	5, 14
BlsI	GCNGC	2 cut(s)	6, 15
BmiI	GGNNCC	5 cut(s)	99, 156, 192, 227, 343
BpiI	GAAGAC	2 cut(s)	262, 329
BsaHI	GRCGYC	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	225, 341
BspACI	CCGC	2 cut(s)	14, 95
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	5 cut(s)	99, 156, 192, 227, 343
BspPI	GGATC	4 cut(s)	220, 233, 336, 349
BsrBI	CCGCTC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	42
BssMI	GATC	2 cut(s)	225, 341
BssNI	GRCGYC	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	228, 344
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	225, 341
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 13, 140
BstNSI	RCATGY	1 cut(s)	107
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	2 cut(s)	262, 329
BstX2I	RGATCY	2 cut(s)	225, 341
BstXI	CCANNNNNNTGG	2 cut(s)	151, 187
BstYI	RGATCY	2 cut(s)	225, 341
CfoI	GCGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	3 cut(s)	157, 193, 285
CviKI_1	RGCY	3 cut(s)	157, 193, 285
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	2 cut(s)	227, 343
DpnII	GATC	2 cut(s)	225, 341
DraI	TTTAAA	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	105, 121, 141, 177, 214, 216, 222, 316
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	5, 14
Fsp4HI	GCNGC	2 cut(s)	5, 14
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	5, 14
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	182, 218
Hpy166II	GTNNAC	2 cut(s)	45, 87
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	45, 87
Hpy99I	CGWCG	5 cut(s)	13, 82, 85, 88, 269
HpyCH4IV	ACGT	2 cut(s)	47, 80
HpyCH4V	TGCA	4 cut(s)	134, 238, 332, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 13, 140
HpySE526I	ACGT	2 cut(s)	47, 80
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	225, 341
LmnI	GCTCC	3 cut(s)	21, 154, 190
LpnPI	CCDG	3 cut(s)	32, 75, 332
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	47, 80
MalI	GATC	2 cut(s)	227, 343
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	2 cut(s)	225, 341
MboII	GAAGA	4 cut(s)	264, 267, 334, 342
MflI	RGATCY	2 cut(s)	225, 341
MnlI	CCTC	1 cut(s)	381
MseI	TTAA	3 cut(s)	245, 276, 305
MslI	CAYNNNNRTG	2 cut(s)	149, 185
MspI	CCGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	10, 13, 140
NdeII	GATC	2 cut(s)	225, 341
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	5 cut(s)	99, 156, 192, 227, 343
NspI	RCATGY	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PflFI	GACNNNGTC	2 cut(s)	79, 82
PkrI	GCNGC	2 cut(s)	6, 15
PspN4I	GGNNCC	5 cut(s)	99, 156, 192, 227, 343
PsuI	RGATCY	2 cut(s)	225, 341
PsyI	GACNNNGTC	2 cut(s)	79, 82
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	149, 185
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	245, 276, 305
SatI	GCNGC	2 cut(s)	5, 14
Sau3AI	GATC	2 cut(s)	225, 341
SetI	ASST	5 cut(s)	50, 83, 172, 208, 311
SmiMI	CAYNNNNRTG	2 cut(s)	149, 185
SsiI	CCGC	2 cut(s)	14, 95
SspMI	CTAG	1 cut(s)	108
TaiI	ACGT	2 cut(s)	50, 83
TaqI	TCGA	1 cut(s)	86
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	245, 276, 305
Tru9I	TTAA	3 cut(s)	245, 276, 305
TseI	GCWGC	1 cut(s)	4
Tth111I	GACNNNGTC	2 cut(s)	79, 82
XceI	RCATGY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.