Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3383824 .. 3401479

Gene Structure 17656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAACTAAATGGCCATAATGGCATAGGTGATAATAATACTTGCTTGCAGGAACATGATGAACAGATTGATGTGGCCTACATTCCAAGATCTGGCATAAAGCCTTCAAAAGTAATTGAAACGCAGAAAGAGATCGACAAGAAACTTGACTACTTGCATTGTTGGTCTTTTGATGAAATATATGGCATTATAACCTATGCCACATATATAAAATCGTATAAGAAATCTACAACATTGCTTGTGAAGCAACACATGGAATTTGAAAAAAATCTGGAAAACTTGGGTGTCTTAAAGATGCAGGGCATGAACTTCATTCTCTGGTCTAATGTCTGTAGGCCTGTAGGCGTTTCAGATATTGCAGAGCTCGAGGCTACGACGGAGCATGACGTCGAATATTATGAGCTATGGGAATTGATCGAGGAGATTGACGACCTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

146

Amino Acids

16.99

Weight (kDa)

4.69

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AatII	GACGTC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	108, 119, 263
AluBI	AGCT	2 cut(s)	364, 403
AluI	AGCT	2 cut(s)	364, 403
Alw21I	GWGCWC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	13, 75, 335
ApoI	RAATTY	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	439
BfmI	CTRYAG	2 cut(s)	331, 339
BglI	GCCNNNNNGGC	1 cut(s)	21
BglII	AGATCT	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	15, 77, 337
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	3 cut(s)	15, 77, 337
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	89, 132, 414
BspANI	GGCC	3 cut(s)	15, 77, 337
BsrDI	GCAATG	1 cut(s)	233
BssMI	GATC	3 cut(s)	89, 132, 414
BssNI	GRCGYC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	92, 135, 417
BstMBI	GATC	3 cut(s)	89, 132, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 244
BstSFI	CTRYAG	2 cut(s)	331, 339
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	3 cut(s)	15, 77, 337
Cac8I	GCNNGC	1 cut(s)	47
CviAII	CATG	4 cut(s)	56, 253, 304, 383
CviJI	RGCY	7 cut(s)	15, 77, 103, 337, 364, 371, 403
CviKI_1	RGCY	7 cut(s)	15, 77, 103, 337, 364, 371, 403
DpnI	GATC	3 cut(s)	91, 134, 416
DpnII	GATC	3 cut(s)	89, 132, 414
EaeI	YGGCCR	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	364
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	4 cut(s)	59, 256, 307, 386
FatI	CATG	4 cut(s)	55, 252, 303, 382
FriOI	GRGCYC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	15, 77, 337
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	59, 256, 307, 386
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	272
Hpy99I	CGWCG	2 cut(s)	379, 392
HpyAV	CCTTC	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	4 cut(s)	49, 157, 298, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 244
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	59, 256, 307, 386
Kzo9I	GATC	3 cut(s)	89, 132, 414
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	35, 78, 257, 284, 304, 351
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	387
MalI	GATC	3 cut(s)	91, 134, 416
MboI	GATC	3 cut(s)	89, 132, 414
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	3 cut(s)	114, 257, 410
MluNI	TGGCCA	1 cut(s)	15
MnlI	CCTC	2 cut(s)	361, 412
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	21, 244
NdeII	GATC	3 cut(s)	89, 132, 414
NlaIII	CATG	4 cut(s)	59, 256, 307, 386
PaeR7I	CTCGAG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	366
PspXI	VCTCGAGB	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	89, 132, 414
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	6 cut(s)	31, 197, 366, 390, 405, 435
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	2 cut(s)	331, 339
Sfr274I	CTCGAG	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	114, 257, 410
SseBI	AGGCCT	1 cut(s)	337
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	1 cut(s)	439
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	135, 366, 390, 417
TasI	AATT	3 cut(s)	114, 257, 410
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	17, 75, 189, 301, 320
TspGWI	ACGGA	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	365
XspI	CTAG	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.