Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7547705 .. 7556912

Gene Structure 9208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATCTGCATGGGACCATATCACCTTATATTGGCAACGTCTCCTTCCTTAGGTTCATCAACCTTCGAAATAATAGCTTCTCCGGAAGATTCCACAAAAGAAGTTGATCGTTTGTTCCGACCGCACCATCTCAATCTTAGTCAAAGCATGCCGGAGGAAGATTTCCGTCAACCCGACATCCCGCCCGGATCGAGCATCATAAGTTGTGCAAGTAAACCTCCTTACCGGCAAAATTCCATCGATATTGGCTCATTGGTAAAACTTATGTTTCTTTCTCTTGAGAAAAACAATTTGACAGGGGGCATCCTACCTTCCTTGGGAAATCTTTCATCAATCAATGTACTTTCCTTGGCATATAACAATTTGGTGGGCAAGATTCCAGAGGACATAGGCCAATTGATAAGATTGGACAATAATTTTGTGGGGCAAGTTCCAGCAAGTTTTGGGAATCTTTCGGATCCAAGGAAGAAAGCATTCCTCCAAGTCTTGGAAACTCGCCAACATTTGCAGGAGATGGATATATCACAGAATAGGCTAAGTGGAGAAATACCACCACAGAAATTCCAAATCATTGGAGACTGTCTAATCCTTGAATTTCTTAACCTACGAGAGAATCTCTTTCAAAGAATCATACCTTCTTCTTTGGCTTTTTTGAAAGGTCTTGAGTATCTTGATCTTTCAAGAAACAACTTGTCCGTACAAATTCCAAAAGATCTGCAGAGACTTCCCTTCTTGCAATATTTGAACCTTTCTTTCAATAATCTAGAAGGTGAGGTACCAAAAGAAGGAGCCTTTCGGAACACAAGTGCAGCATCATTGGTAGGAAATATAGAACTTTGTGGTGGTGTTTCAGAATTGCTACTACCTACTGCCCCATCAAATTTTCATAGCAGAGAAAGAGCCATGAAGAATCTTGTGAAGATCTTCACTTGTTGCTCCAGCACGGATTATAATGGCAATAAATTCAAAGCTCTAGTTTTTAAGTATATGTCAAACGGTAGTTTAGAGGAGTGGATGCACAAAGAAAACCAATCAAGGAGTTTGAACCTTCTTCAAAGACCGAATATTGCTTATGATGTGGCTTCTGCATTGTGTTATCTTCATGGCCATTGTGAACCTCAAATCATTCACCGCAACATGAAGCCAAGCAATGTTCTTCTTGATGATGGCATGGTTGCTTGTGTAGGTGAATTTCGGTTAGCCGTACTCCTCTCAACCACCGAAGAGTCTTCTCAAACTCAAAGTAGCACAATTGGAATGAGGGGAACAATGGGCTATGCGGCTCCGTGTAATGATCTTCCGCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

436

Amino Acids

48.4

Weight (kDa)

6.03

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	82 - 274	4.9e-08	Leucine-rich repeat region
LRR_8	PF13855	198 - 255	9.1e-10	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	302 - 417	7.6e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	302 - 429	8.7e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	1303
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	5 cut(s)	122, 182, 1132, 1280, 1301
AclWI	GGATC	3 cut(s)	196, 452, 465
AcoI	YGGCCR	1 cut(s)	1105
AcsI	RAATTY	7 cut(s)	232, 560, 593, 702, 880, 962, 1190
AfaI	GTAC	4 cut(s)	342, 699, 777, 1206
AfiI	CCNNNNNNNGG	5 cut(s)	31, 50, 317, 487, 785
AgsI	TTSAA	9 cut(s)	593, 623, 655, 681, 745, 757, 967, 1045, 1055
AluBI	AGCT	2 cut(s)	77, 971
AluI	AGCT	2 cut(s)	77, 971
Alw26I	GTCTC	3 cut(s)	45, 570, 715
AlwI	GGATC	3 cut(s)	196, 452, 465
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	391, 1105
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	7 cut(s)	232, 560, 593, 702, 880, 962, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	3 cut(s)	325, 473, 923
Asp718I	GGTACC	1 cut(s)	775
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	4 cut(s)	14, 782, 1121, 1199
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	14
AxyI	CCTNAGG	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	1107
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	775
BarI	GAAGNNNNNNTAC	2 cut(s)	759, 791
BbsI	GAAGAC	1 cut(s)	1221
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	5 cut(s)	135, 245, 508, 883, 1160
BceAI	ACGGC	1 cut(s)	1187
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	45, 570, 715
BfaI	CTAG	2 cut(s)	764, 974
BfmI	CTRYAG	1 cut(s)	716
BglII	AGATCT	2 cut(s)	712, 921
BisI	GCNGC	2 cut(s)	810, 1281
BlsI	GCNGC	2 cut(s)	811, 1282
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	5 cut(s)	15, 459, 777, 790, 1284
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	4 cut(s)	204, 312, 821, 1005
BpiI	GAAGAC	1 cut(s)	1221
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
BpmI	CTGGAG	1 cut(s)	922
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	299, 683
BpuMI	CCSGG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	315, 348, 461
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 50, 317, 487, 785
Bse118I	RCCGGY	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	1156
BseAI	TCCGGA	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	315, 348, 461
BseGI	GGATG	3 cut(s)	177, 303, 1020
BseLI	CCNNNNNNNGG	5 cut(s)	31, 50, 317, 487, 785
BseMI	GCAATG	1 cut(s)	1156
BseRI	GAGGAG	2 cut(s)	1022, 1199
BseXI	GCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	393, 1107
BshNI	GGYRCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	83, 152, 186, 226
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	5 cut(s)	31, 50, 317, 487, 785
BsmAI	GTCTC	3 cut(s)	45, 570, 715
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	393, 1107
Bsp119I	TTCGAA	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
BspACI	CCGC	5 cut(s)	122, 182, 1132, 1280, 1301
BspANI	GGCC	2 cut(s)	393, 1107
BspDI	ATCGAT	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	82
BspLI	GGNNCC	5 cut(s)	15, 459, 777, 790, 1284
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	3 cut(s)	196, 452, 465
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	1303
BsrDI	GCAATG	1 cut(s)	1156
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	315, 348, 461
BssMI	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
BssT1I	CCWWGG	3 cut(s)	315, 348, 461
Bst4CI	ACNGT	2 cut(s)	581, 998
Bst6I	CTCTTC	1 cut(s)	1218
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	49, 137, 536
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	177, 303, 1020
BstKTI	GATC	8 cut(s)	6, 109, 191, 460, 676, 715, 924, 1297
BstMAI	GTCTC	3 cut(s)	45, 570, 715
BstMBI	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
BstMCI	CGRYCG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	716
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	3 cut(s)	457, 712, 921
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	3 cut(s)	457, 712, 921
Bsu15I	ATCGAT	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	393, 1107
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	177, 303, 1020
Cac8I	GCNNGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	4 cut(s)	341, 698, 776, 1205
CviAII	CATG	6 cut(s)	10, 148, 904, 1103, 1138, 1171
CviQI	GTAC	4 cut(s)	341, 698, 776, 1205
DdeI	CTNAG	3 cut(s)	49, 137, 536
DpnI	GATC	8 cut(s)	5, 108, 190, 459, 675, 714, 923, 1296
DpnII	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
EaeI	YGGCCR	1 cut(s)	1105
Eam1104I	CTCTTC	1 cut(s)	1218
EarI	CTCTTC	1 cut(s)	1218
Eco130I	CCWWGG	3 cut(s)	315, 348, 461
Eco47I	GGWCC	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT14I	CCWWGG	3 cut(s)	315, 348, 461
ErhI	CCWWGG	3 cut(s)	315, 348, 461
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	6 cut(s)	13, 151, 907, 1106, 1141, 1174
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	6 cut(s)	9, 147, 903, 1102, 1137, 1170
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	810, 1281
FokI	GGATG	3 cut(s)	164, 290, 1027
Fsp4HI	GCNGC	2 cut(s)	810, 1281
FspBI	CTAG	2 cut(s)	764, 974
GluI	GCNGC	2 cut(s)	810, 1281
GsuI	CTGGAG	1 cut(s)	922
HaeIII	GGCC	2 cut(s)	393, 1107
HapII	CCGG	4 cut(s)	83, 152, 186, 226
Hin1II	CATG	6 cut(s)	13, 151, 907, 1106, 1141, 1174
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	7 cut(s)	89, 376, 448, 613, 627, 910, 1226
HpaII	CCGG	4 cut(s)	83, 152, 186, 226
HphI	GGTGA	4 cut(s)	14, 782, 1121, 1199
Hpy166II	GTNNAC	3 cut(s)	170, 215, 1115
Hpy188I	TCNGA	4 cut(s)	119, 457, 798, 853
Hpy188III	TCNNGA	8 cut(s)	83, 278, 380, 662, 671, 681, 764, 1160
Hpy8I	GTNNAC	3 cut(s)	170, 215, 1115
HpyAV	CCTTC	8 cut(s)	54, 73, 321, 645, 739, 761, 779, 1058
HpyCH4III	ACNGT	2 cut(s)	581, 998
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	8 cut(s)	9, 209, 508, 718, 736, 809, 1018, 1088
HpyF3I	CTNAG	3 cut(s)	49, 137, 536
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	6 cut(s)	13, 151, 907, 1106, 1141, 1174
Kpn2I	TCCGGA	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	779
Kzo9I	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
LmnI	GCTCC	4 cut(s)	788, 941, 1288, 1308
LpnPI	CCDG	9 cut(s)	96, 165, 199, 239, 282, 393, 447, 494, 952
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	4 cut(s)	204, 312, 821, 1005
MaeI	CTAG	2 cut(s)	764, 974
MaeII	ACGT	1 cut(s)	38
MalI	GATC	8 cut(s)	5, 108, 190, 459, 675, 714, 923, 1296
MbiI	CCGCTC	1 cut(s)	1303
MboI	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
MfeI	CAATTG	2 cut(s)	395, 1251
MflI	RGATCY	3 cut(s)	457, 712, 921
MlsI	TGGCCA	1 cut(s)	1107
MluNI	TGGCCA	1 cut(s)	1107
MlyI	GAGTC	1 cut(s)	1235
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	148, 228, 376, 488, 766, 1000, 1128, 1220, 1254
Mox20I	TGGCCA	1 cut(s)	1107
MroI	TCCGGA	1 cut(s)	82
MroXI	GAANNNNTTC	3 cut(s)	325, 473, 923
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	3 cut(s)	600, 981, 1309
Msp20I	TGGCCA	1 cut(s)	1107
MspI	CCGG	4 cut(s)	83, 152, 186, 226
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	2 cut(s)	395, 1251
Mva1269I	GAATGC	1 cut(s)	473
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
NlaIII	CATG	6 cut(s)	13, 151, 907, 1106, 1141, 1174
NlaIV	GGNNCC	5 cut(s)	15, 459, 777, 790, 1284
NspI	RCATGY	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	3 cut(s)	325, 473, 923
PfeI	GAWTC	6 cut(s)	89, 376, 448, 613, 627, 910
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	811, 1282
PleI	GAGTC	1 cut(s)	1234
PpsI	GAGTC	1 cut(s)	1234
PsiI	TTATAA	1 cut(s)	951
PspN4I	GGNNCC	5 cut(s)	15, 459, 777, 790, 1284
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	720
PsuI	RGATCY	3 cut(s)	457, 712, 921
RsaI	GTAC	4 cut(s)	342, 699, 777, 1206
RsaNI	GTAC	4 cut(s)	341, 698, 776, 1205
SaqAI	TTAA	3 cut(s)	600, 981, 1309
SatI	GCNGC	2 cut(s)	810, 1281
Sau3AI	GATC	8 cut(s)	3, 106, 188, 457, 673, 712, 921, 1294
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	1235
ScrFI	CCNGG	1 cut(s)	186
SfaNI	GCATC	4 cut(s)	204, 312, 821, 1005
SfcI	CTRYAG	1 cut(s)	716
SfuI	TTCGAA	1 cut(s)	66
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	278, 662
SmoI	CTYRAG	2 cut(s)	278, 662
SphI	GCATGC	1 cut(s)	151
SsiI	CCGC	5 cut(s)	122, 182, 1132, 1280, 1301
SspI	AATATT	2 cut(s)	740, 1066
SspMI	CTAG	2 cut(s)	764, 974
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	3 cut(s)	315, 348, 461
TaaI	ACNGT	2 cut(s)	581, 998
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	66, 191, 240
TaqII	GACCGA	1 cut(s)	1075
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	1283
TfiI	GAWTC	6 cut(s)	89, 376, 448, 613, 627, 910
Tru1I	TTAA	3 cut(s)	600, 981, 1309
Tru9I	TTAA	3 cut(s)	600, 981, 1309
TseI	GCWGC	1 cut(s)	809
TspDTI	ATGAA	6 cut(s)	45, 318, 875, 920, 1091, 1154
TspGWI	ACGGA	4 cut(s)	155, 685, 959, 1275
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	7 cut(s)	232, 560, 593, 702, 880, 962, 1190
XbaI	TCTAGA	1 cut(s)	763
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	3 cut(s)	325, 473, 923
XspI	CTAG	2 cut(s)	764, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.