Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18665482 .. 18674478

Gene Structure 8997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGGGAAAGGAGGTTGGGCTGTTGGCCGAGACGTTCTCGGGATCTATGGTGGCGGATGGGTGCGAAAGGTCGGATCGGGAATAAGACAGCGTGAATTTGATGGTGAAAGGGATGAGAAGAAGCTCCGGTGCGACAATGGAGGGTGGAGGTTGAGGTCGACTTCATGGCTTAGCATCATAGAAAGAATCTCGGACCTCACTCTCCTACTACTCTCATCTCATCGCATAATCCTACTATTGCACTCGTCCAATCATGCTACTGCACTCATACTCGTCAAGTTCAGCTACTGCACTTATACTCGTGTCAATTCTGCTACTGCACTCGCCGCACTCATACTCCGTCTAGTTACATTCTTGTCCTCGTACTCTTGTTCTGCTACTTGCATTCGTCATCGTCTAATCCTACTACTGCACTCATACTCGTCCTGCTACTGTACTCATACTCGTCCTGCTACTGCACTCATACTCGTTCAGTTCTGCTACTGCACTCGTACTCGTTCAATTCGCTACTGCAGTCGTACTCGTCCGGTTCTGCTACGCACTTGTACTCGTCCAGTTCTTCTACTGCACTTGTACTCGTCCAATTCTTCTACTGCAGTCTTACTTGTCCAGTTCTGCTACTGCACTTGTACTCGTTCAATTCTGCTACTGCAGTCGTACTCGTCTAGTTCTGCTACTGCACTTGTACTCGTCCAATTCTTCTACTGCTTGAAGATCGAGGCAATATTGAAGGTTAGCTCTACTAATGCTTCAAGATGGAGACCAGATGAAGGTAACCTCTGCTACTGCTGCTATCGAAGGTCTCTGCTACTACTGCTACTGAAAGAAGTAGATCCCTGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTCAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATAATAGAAAATCTTATTGAGATGGAGGTAGATTATACAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGTATACACCGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCGGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACAACAGACTTGAAGATCATTTCAGCAAGACCAGTCATTGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

513

Amino Acids

58.03

Weight (kDa)

8.95

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	274 - 401	1.4e-39	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	158, 1316
AciI	CCGC	2 cut(s)	54, 327
AclWI	GGATC	3 cut(s)	50, 82, 827
AcoI	YGGCCR	2 cut(s)	25, 870
AcsI	RAATTY	3 cut(s)	95, 1177, 1334
AcuI	CTGAAG	2 cut(s)	959, 1281
AfaI	GTAC	9 cut(s)	365, 436, 493, 520, 547, 575, 631, 659, 687
AfiI	CCNNNNNNNGG	1 cut(s)	770
AgeI	ACCGGT	1 cut(s)	1436
AluBI	AGCT	4 cut(s)	124, 285, 738, 1199
AluI	AGCT	4 cut(s)	124, 285, 738, 1199
Alw21I	GWGCWC	1 cut(s)	1108
Alw26I	GTCTC	4 cut(s)	24, 754, 807, 1348
Alw44I	GTGCAC	1 cut(s)	1104
AlwI	GGATC	3 cut(s)	50, 82, 827
AlwNI	CAGNNNCTG	1 cut(s)	288
Ama87I	CYCGRG	3 cut(s)	38, 1274, 1283
AoxI	GGCC	2 cut(s)	25, 870
ApaLI	GTGCAC	1 cut(s)	1104
ApeKI	GCWGC	2 cut(s)	789, 1199
ApoI	RAATTY	3 cut(s)	95, 1177, 1334
AsiGI	ACCGGT	1 cut(s)	1436
AspS9I	GGNCC	2 cut(s)	193, 919
AsuHPI	GGTGA	4 cut(s)	116, 1221, 1401, 1454
AsuII	TTCGAA	1 cut(s)	865
AvaI	CYCGRG	3 cut(s)	38, 1274, 1283
AvaII	GGWCC	2 cut(s)	193, 919
AxyI	CCTNAGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	1108
BauI	CACGAG	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	949, 974
Bbv12I	GWGCWC	1 cut(s)	1108
BbvI	GCAGC	2 cut(s)	776, 1186
BccI	CCATC	5 cut(s)	51, 95, 750, 1138, 1425
BceAI	ACGGC	1 cut(s)	885
BcoDI	GTCTC	4 cut(s)	24, 754, 807, 1348
BfaI	CTAG	3 cut(s)	344, 666, 1458
BfmI	CTRYAG	3 cut(s)	511, 594, 650
BisI	GCNGC	3 cut(s)	327, 790, 1200
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	328, 791, 1201
Bme18I	GGWCC	2 cut(s)	193, 919
BmeT110I	CYCGRG	3 cut(s)	38, 1274, 1283
BmgT120I	GGNCC	2 cut(s)	193, 919
BmiI	GGNNCC	1 cut(s)	921
BmsI	GCATC	4 cut(s)	183, 893, 1246, 1363
BpiI	GAAGAC	2 cut(s)	949, 974
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	1459
Bpu1102I	GCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	865
BsaI	GGTCTC	2 cut(s)	754, 807
BsaWI	WCCGGW	4 cut(s)	126, 526, 1321, 1436
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse118I	RCCGGY	1 cut(s)	1436
Bse1I	ACTGG	5 cut(s)	554, 610, 1008, 1052, 1526
Bse21I	CCTNAGG	1 cut(s)	915
BseGI	GGATG	5 cut(s)	62, 118, 1078, 1261, 1346
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	4 cut(s)	906, 1026, 1107, 1194
BseNI	ACTGG	5 cut(s)	554, 610, 1008, 1052, 1526
BseSI	GKGCMC	1 cut(s)	1108
BseXI	GCAGC	2 cut(s)	776, 1186
BsgI	GTGCAG	9 cut(s)	246, 274, 303, 395, 441, 469, 551, 607, 663
BshFI	GGCC	2 cut(s)	27, 872
BshTI	ACCGGT	1 cut(s)	1436
BsiHKAI	GWGCWC	1 cut(s)	1108
BsiHKCI	CYCGRG	3 cut(s)	38, 1274, 1283
BsiSI	CCGG	4 cut(s)	127, 527, 1322, 1437
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	4 cut(s)	24, 754, 807, 1348
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	2 cut(s)	384, 1068
BsnI	GGCC	2 cut(s)	27, 872
Bso31I	GGTCTC	2 cut(s)	754, 807
BsoBI	CYCGRG	3 cut(s)	38, 1274, 1283
Bsp119I	TTCGAA	1 cut(s)	865
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp143I	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	54, 327
BspANI	GGCC	2 cut(s)	27, 872
BspCNI	CTCAG	4 cut(s)	907, 1027, 1108, 1195
BspLI	GGNNCC	1 cut(s)	921
BspMAI	CTGCAG	3 cut(s)	515, 598, 654
BspPI	GGATC	3 cut(s)	50, 82, 827
BspT104I	TTCGAA	1 cut(s)	865
BspTNI	GGTCTC	2 cut(s)	754, 807
BsrFI	RCCGGY	1 cut(s)	1436
BsrI	ACTGG	5 cut(s)	554, 610, 1008, 1052, 1526
BssAI	RCCGGY	1 cut(s)	1436
BssMI	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
BssNAI	GTATAC	1 cut(s)	1317
BssSI	CACGAG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	1317
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	434, 1103
BstAPI	GCANNNNNTGC	3 cut(s)	890, 899, 1112
BstBI	TTCGAA	1 cut(s)	865
BstC8I	GCNNGC	2 cut(s)	955, 1113
BstDEI	CTNAG	5 cut(s)	170, 915, 1035, 1116, 1203
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	5 cut(s)	62, 118, 1078, 1261, 1346
BstKTI	GATC	6 cut(s)	45, 77, 717, 835, 1481, 1512
BstMAI	GTCTC	4 cut(s)	24, 754, 807, 1348
BstMBI	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 789, 814, 890, 899, 1112, 1208
BstPI	GGTNACC	1 cut(s)	773
BstSFI	CTRYAG	3 cut(s)	511, 594, 650
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	2 cut(s)	776, 1186
BstV2I	GAAGAC	2 cut(s)	949, 974
BstX2I	RGATCY	2 cut(s)	42, 832
BstYI	RGATCY	2 cut(s)	42, 832
BstZ17I	GTATAC	1 cut(s)	1317
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	27, 872
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	5 cut(s)	62, 118, 1078, 1261, 1346
BtsIMutI	CAGTG	2 cut(s)	983, 1380
Cac8I	GCNNGC	2 cut(s)	955, 1113
CaiI	CAGNNNCTG	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	1436
Cfr13I	GGNCC	2 cut(s)	193, 919
Csp6I	GTAC	9 cut(s)	364, 435, 492, 519, 546, 574, 630, 658, 686
CspAI	ACCGGT	1 cut(s)	1436
CviAII	CATG	4 cut(s)	165, 254, 1081, 1217
CviQI	GTAC	9 cut(s)	364, 435, 492, 519, 546, 574, 630, 658, 686
DdeI	CTNAG	5 cut(s)	170, 915, 1035, 1116, 1203
DpnI	GATC	6 cut(s)	44, 76, 716, 834, 1480, 1511
DpnII	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
EaeI	YGGCCR	2 cut(s)	25, 870
EciI	GGCGGA	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	754, 807
Eco32I	GATATC	1 cut(s)	1239
Eco47I	GGWCC	2 cut(s)	193, 919
Eco57I	CTGAAG	2 cut(s)	959, 1281
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	3 cut(s)	38, 1274, 1283
Eco91I	GGTNACC	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	919
EcoO65I	GGTNACC	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	1239
EcoT22I	ATGCAT	2 cut(s)	886, 1218
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	4 cut(s)	168, 257, 1084, 1220
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	4 cut(s)	164, 253, 1080, 1216
FblI	GTMKAC	2 cut(s)	158, 1316
Fnu4HI	GCNGC	3 cut(s)	327, 790, 1200
FokI	GGATG	5 cut(s)	69, 125, 1085, 1268, 1333
Fsp4HI	GCNGC	3 cut(s)	327, 790, 1200
FspBI	CTAG	3 cut(s)	344, 666, 1458
GluI	GCNGC	3 cut(s)	327, 790, 1200
GsuI	CTGGAG	1 cut(s)	1459
HaeIII	GGCC	2 cut(s)	27, 872
HapII	CCGG	4 cut(s)	127, 527, 1322, 1437
Hin1II	CATG	4 cut(s)	168, 257, 1084, 1220
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	186, 1450
HpaII	CCGG	4 cut(s)	127, 527, 1322, 1437
HphI	GGTGA	4 cut(s)	116, 1221, 1401, 1454
Hpy166II	GTNNAC	4 cut(s)	159, 1087, 1106, 1317
Hpy188I	TCNGA	3 cut(s)	74, 193, 941
Hpy188III	TCNNGA	5 cut(s)	40, 78, 753, 1458, 1476
Hpy8I	GTNNAC	4 cut(s)	159, 1087, 1106, 1317
HpyAV	CCTTC	4 cut(s)	724, 764, 792, 983
HpyCH4III	ACNGT	2 cut(s)	434, 1103
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 789, 814, 890, 899, 1112, 1208
HpyF3I	CTNAG	5 cut(s)	170, 915, 1035, 1116, 1203
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	168, 257, 1084, 1220
Kzo9I	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	2 cut(s)	776, 1186
LweI	GCATC	4 cut(s)	183, 893, 1246, 1363
MaeI	CTAG	3 cut(s)	344, 666, 1458
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	6 cut(s)	346, 773, 847, 1030, 1097, 1486
MalI	GATC	6 cut(s)	44, 76, 716, 834, 1480, 1511
MboI	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
MboII	GAAGA	8 cut(s)	130, 551, 579, 691, 724, 954, 974, 1519
MflI	RGATCY	2 cut(s)	42, 832
MhlI	GDGCHC	1 cut(s)	1108
MlyI	GAGTC	1 cut(s)	1459
MmeI	TCCRAC	1 cut(s)	52
Mph1103I	ATGCAT	2 cut(s)	886, 1218
MseI	TTAA	2 cut(s)	1008, 1540
MspI	CCGG	4 cut(s)	127, 527, 1322, 1437
Mva1269I	GAATGC	2 cut(s)	384, 1068
MwoI	GCNNNNNNNGC	7 cut(s)	326, 789, 814, 890, 899, 1112, 1208
NdeII	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
NlaIII	CATG	4 cut(s)	168, 257, 1084, 1220
NlaIV	GGNNCC	1 cut(s)	921
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	1097
NsiI	ATGCAT	2 cut(s)	886, 1218
NspV	TTCGAA	1 cut(s)	865
PctI	GAATGC	2 cut(s)	384, 1068
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	1436
PkrI	GCNGC	3 cut(s)	328, 791, 1201
PleI	GAGTC	1 cut(s)	1458
PpsI	GAGTC	1 cut(s)	1458
PpuMI	RGGWCCY	1 cut(s)	919
Psp5II	RGGWCCY	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	921
PspPI	GGNCC	2 cut(s)	193, 919
PspPPI	RGGWCCY	1 cut(s)	919
PstI	CTGCAG	3 cut(s)	515, 598, 654
PstNI	CAGNNNCTG	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	42, 832
RsaI	GTAC	9 cut(s)	365, 436, 493, 520, 547, 575, 631, 659, 687
RsaNI	GTAC	9 cut(s)	364, 435, 492, 519, 546, 574, 630, 658, 686
SalI	GTCGAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	1008, 1540
SatI	GCNGC	3 cut(s)	327, 790, 1200
Sau3AI	GATC	6 cut(s)	42, 74, 714, 832, 1478, 1509
Sau96I	GGNCC	2 cut(s)	193, 919
SchI	GAGTC	1 cut(s)	1459
SduI	GDGCHC	1 cut(s)	1108
SfaNI	GCATC	4 cut(s)	183, 893, 1246, 1363
SfcI	CTRYAG	3 cut(s)	511, 594, 650
SfuI	TTCGAA	1 cut(s)	865
SinI	GGWCC	2 cut(s)	193, 919
SsiI	CCGC	2 cut(s)	54, 327
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	3 cut(s)	344, 666, 1458
TaaI	ACNGT	2 cut(s)	434, 1103
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	158, 717, 796, 865
TatI	WGTACW	5 cut(s)	434, 545, 573, 629, 685
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	1008, 1540
Tru9I	TTAA	2 cut(s)	1008, 1540
TscAI	CASTG	2 cut(s)	983, 1387
TseFI	GTSAC	1 cut(s)	1097
TseI	GCWGC	2 cut(s)	789, 1199
Tsp45I	GTSAC	1 cut(s)	1097
TspDTI	ATGAA	4 cut(s)	153, 783, 1089, 1458
TspGWI	ACGGA	2 cut(s)	329, 1268
TspRI	CASTG	2 cut(s)	983, 1387
VneI	GTGCAC	1 cut(s)	1104
VpaK11BI	GGWCC	2 cut(s)	193, 919
XapI	RAATTY	3 cut(s)	95, 1177, 1334
XbaI	TCTAGA	1 cut(s)	1457
XmiI	GTMKAC	2 cut(s)	158, 1316
XspI	CTAG	3 cut(s)	344, 666, 1458
Zsp2I	ATGCAT	2 cut(s)	886, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.