Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23084883 .. 23086330

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCCACAGGGAAGCCTCCTTGTAGCGAAAAATTCAGAGAAGGGGTCGCTGCAGCGCTGTTCCATATGGCAACAAAAAATTCTCGTCCACTGATCCCGGAGATCTATCCTCTAAGGGAAAAGATTTTTTGCTACGCTGCCTGCAAAGCTTCTAGTTCGTCTAAGCTACACGAGCAACCACGCTTGGGCTACTCAAGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

67

Amino Acids

7.4

Weight (kDa)

9.41

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	32, 79
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	185
AluBI	AGCT	2 cut(s)	149, 166
AluI	AGCT	2 cut(s)	149, 166
AlwI	GGATC	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	50, 53, 137
ApoI	RAATTY	2 cut(s)	32, 79
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	37, 65, 124
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	59
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	3 cut(s)	51, 54, 138
BlsI	GCNGC	3 cut(s)	52, 55, 139
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	37, 65, 124
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	93, 102
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	88
BssMI	GATC	2 cut(s)	93, 102
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	113, 162
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	96, 105
BstMBI	GATC	2 cut(s)	93, 102
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 172, 195
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	37, 65, 124
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	58
CviJI	RGCY	6 cut(s)	5, 16, 149, 166, 189, 198
CviKI_1	RGCY	6 cut(s)	5, 16, 149, 166, 189, 198
DdeI	CTNAG	2 cut(s)	113, 162
DpnI	GATC	2 cut(s)	95, 104
DpnII	GATC	2 cut(s)	93, 102
EaeI	YGGCCR	1 cut(s)	3
Eco47III	AGCGCT	1 cut(s)	57
FaiI	YATR	2 cut(s)	66, 68
FauNDI	CATATG	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	51, 54, 138
Fsp4HI	GCNGC	3 cut(s)	51, 54, 138
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	51, 54, 138
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	147
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	53, 144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 172, 195
HpyF3I	CTNAG	2 cut(s)	113, 162
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	93, 102
LpnPI	CCDG	2 cut(s)	111, 154
Lsp1109I	GCAGC	3 cut(s)	37, 65, 124
MaeI	CTAG	1 cut(s)	153
MalI	GATC	2 cut(s)	95, 104
MboI	GATC	2 cut(s)	93, 102
MflI	RGATCY	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	32, 79
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	27, 120
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	146, 172, 195
NciI	CCSGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	2 cut(s)	93, 102
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	52, 55, 139
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	102
SatI	GCNGC	3 cut(s)	51, 54, 138
Sau3AI	GATC	2 cut(s)	93, 102
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	2 cut(s)	151, 168
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	32, 79
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	96
TasI	AATT	2 cut(s)	32, 79
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	3 cut(s)	50, 53, 137
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	32, 79
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.