Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25029595 .. 25033974

Gene Structure 4380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTGTGTATGTGAATGCAATACATGTGTTTATGTTTTATATGCAATTATTTTAGTGTTCCAGATTTTTACTTTCAAATTGGTCCTTAAAGGACTTCGAGATCGGAAAGCCGCTGGGCAAAGGCAAGATTGGGCGGGTCTACGTCGCCGAGAAGTCAAGGTAGGTGCCCCGATTCAATTTGGGGAAGGAAAAAAAGTTAGGGTCTTGAATAATTTGGTTTGGGGGGAAATTTTTTTGCAGAGCCAATACGTCTTGGCATTGAAGGTGTTGTTCAAGAAGCAAATAAAGAAGTACAACATTCACCACCAGCTAAAGAGAGAGATGGAGATTCGGACGAGTACGAGGCACCCCAACATTCTTCTTCTCTATGGTTGGTTCCATGATGATGAGCGCATCGTGTTGATTCTTGAGTACACTCATGGCGGTGAGCTTTATGGGCTTTTGAAGGATTGTACCTACTACACCGAGAAACGTGCCGCAACCCTTCCTGCAACACCTCAAGTTTCTGCTGAAGCCAAAGACCTCATTACCAAGGGCCGAGCTTATTTTAGTAAAATACACCTCTTCTCATGTGATCACACCAACTTAAGGACTATGCGATCAGCAATTCTCCATCTCATATCCAATTATCCATTTGACTTTCGATCAAAACCTAACATCTCCTCTCTCAAACGGTCGAACTCGTCGGTCTCTCAAACCCCATCGATCTGCAATCGATCAAAACCCCATGAAGCCCCGGACGAACTCTCTCGGTCTCTCAAACCCCATCGATCCGCAATCAATCAAAACCCCATGAAGCCCCAAATGAACTCTCTCGGTCTCTCAAACCCCATCGATCGCAATCGATCAAAACCCCATGAAGCCCCATCGATGCGCAATCGATCAAAACCCAAATTAAAGCGCCGGACAAACTCTCTTAGTCTCTCAAACCCCATCGATCTGCAATCGTCAAAACCCCATGAAGCCCCATCGATTGCAATCGATCAAAACCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000228 GO:0000278 GO:0000775 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005875 GO:0005876 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008152 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022402 GO:0031974 GO:0031981 GO:0032133 GO:0032465 GO:0032991 GO:0035173 GO:0035174 GO:0035175 GO:0035404 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043987 GO:0043988 GO:0044022 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0048471 GO:0050789 GO:0050794 GO:0051233 GO:0051276 GO:0051302 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140096 GO:1901564 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

38.1

Weight (kDa)

9.97

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 160	6.3e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 161	7.4e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	875
AccB1I	GGYRCC	2 cut(s)	164, 345
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	5 cut(s)	111, 134, 423, 477, 774
AclWI	GGATC	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	4 cut(s)	293, 340, 413, 454
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	76, 176, 208, 262, 274, 445
AluBI	AGCT	3 cut(s)	310, 430, 542
AluI	AGCT	3 cut(s)	310, 430, 542
Alw26I	GTCTC	4 cut(s)	694, 759, 824, 926
AlwI	GGATC	1 cut(s)	765
AoxI	GGCC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	3 cut(s)	393, 876, 903
AspS9I	GGNCC	2 cut(s)	82, 535
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	293, 437
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	164, 345
BccI	CCATC	8 cut(s)	316, 621, 709, 774, 839, 874, 941, 976
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	4 cut(s)	694, 759, 824, 926
BfoI	RGCGCY	1 cut(s)	904
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	2 cut(s)	111, 477
BlsI	GCNGC	2 cut(s)	112, 478
Bme1390I	CCNGG	1 cut(s)	737
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 535
BmiI	GGNNCC	3 cut(s)	166, 347, 377
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	2 cut(s)	402, 861
BpuEI	CTTGAG	2 cut(s)	428, 483
BpuMI	CCSGG	1 cut(s)	737
BsaBI	GATNNNNATC	2 cut(s)	840, 977
BsaI	GGTCTC	3 cut(s)	694, 759, 824
BsaJI	CCNNGG	2 cut(s)	531, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse8I	GATNNNNATC	2 cut(s)	840, 977
BseDI	CCNNGG	2 cut(s)	531, 735
BseJI	GATNNNNATC	2 cut(s)	840, 977
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	652
BseSI	GKGCMC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	113
Bsh1285I	CGRYCG	2 cut(s)	677, 838
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	2 cut(s)	164, 345
BsiEI	CGRYCG	2 cut(s)	677, 838
BsiSI	CCGG	2 cut(s)	737, 904
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	4 cut(s)	694, 759, 824, 926
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	537
Bso31I	GGTCTC	3 cut(s)	694, 759, 824
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	5 cut(s)	111, 134, 423, 477, 774
BspANI	GGCC	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	166, 347, 377
BspPI	GGATC	1 cut(s)	765
BspT107I	GGYRCC	2 cut(s)	164, 345
BspTI	CTTAAG	1 cut(s)	586
BspTNI	GGTCTC	3 cut(s)	694, 759, 824
BssECI	CCNNGG	2 cut(s)	531, 735
BssT1I	CCWWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	569
BstAFI	CTTAAG	1 cut(s)	586
BstDEI	CTNAG	1 cut(s)	917
BstH2I	RGCGCY	1 cut(s)	904
BstHHI	GCGC	3 cut(s)	393, 876, 903
BstMAI	GTCTC	4 cut(s)	694, 759, 824, 926
BstMCI	CGRYCG	2 cut(s)	677, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	537
CfoI	GCGC	3 cut(s)	393, 876, 903
Cfr13I	GGNCC	2 cut(s)	82, 535
Csp6I	GTAC	4 cut(s)	292, 339, 412, 453
CviAII	CATG	8 cut(s)	24, 380, 419, 570, 728, 793, 857, 959
CviQI	GTAC	4 cut(s)	292, 339, 412, 453
DdeI	CTNAG	1 cut(s)	917
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	3 cut(s)	694, 759, 824
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	8 cut(s)	27, 383, 422, 573, 731, 796, 860, 962
FatI	CATG	8 cut(s)	23, 379, 418, 569, 727, 792, 856, 958
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	111, 477
Fsp4HI	GCNGC	2 cut(s)	111, 477
FspI	TGCGCA	1 cut(s)	875
GlaI	GCGC	3 cut(s)	392, 875, 902
GluI	GCNGC	2 cut(s)	111, 477
GsaI	CCCAGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	904
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	2 cut(s)	737, 904
HhaI	GCGC	3 cut(s)	393, 876, 903
Hin1II	CATG	8 cut(s)	27, 383, 422, 573, 731, 796, 860, 962
Hin6I	GCGC	3 cut(s)	391, 874, 901
HinP1I	GCGC	3 cut(s)	391, 874, 901
HinfI	GANTC	3 cut(s)	172, 328, 403
HpaII	CCGG	2 cut(s)	737, 904
HphI	GGTGA	2 cut(s)	293, 437
Hpy166II	GTNNAC	2 cut(s)	140, 414
Hpy188I	TCNGA	2 cut(s)	105, 333
Hpy188III	TCNNGA	5 cut(s)	61, 98, 205, 274, 407
Hpy8I	GTNNAC	2 cut(s)	140, 414
Hpy99I	CGWCG	2 cut(s)	147, 688
HpyAV	CCTTC	4 cut(s)	179, 256, 439, 494
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4IV	ACGT	3 cut(s)	142, 249, 472
HpyCH4V	TGCA	7 cut(s)	18, 44, 238, 491, 711, 943, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	917
HpySE526I	ACGT	3 cut(s)	142, 249, 472
Hsp92II	CATG	8 cut(s)	27, 383, 422, 573, 731, 796, 860, 962
HspAI	GCGC	3 cut(s)	391, 874, 901
Ksp22I	TGATCA	1 cut(s)	574
LpnPI	CCDG	6 cut(s)	74, 99, 320, 501, 750, 917
LweI	GCATC	2 cut(s)	402, 861
MaeII	ACGT	3 cut(s)	142, 249, 472
MboII	GAAGA	3 cut(s)	350, 353, 556
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	9 cut(s)	45, 77, 176, 211, 228, 606, 625, 893, 994
MnlI	CCTC	5 cut(s)	336, 507, 533, 572, 673
MseI	TTAA	4 cut(s)	87, 587, 896, 997
MslI	CAYNNNNRTG	2 cut(s)	384, 423
MspA1I	CMGCKG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	2 cut(s)	737, 904
MspR9I	CCNGG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	436
NciI	CCSGG	1 cut(s)	737
NlaIII	CATG	8 cut(s)	27, 383, 422, 573, 731, 796, 860, 962
NlaIV	GGNNCC	3 cut(s)	166, 347, 377
NmeAIII	GCCGAG	2 cut(s)	173, 563
NsbI	TGCGCA	1 cut(s)	875
NspI	RCATGY	1 cut(s)	27
PciI	ACATGT	1 cut(s)	23
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	3 cut(s)	172, 328, 403
PkrI	GCNGC	2 cut(s)	112, 478
Ple19I	CGATCG	1 cut(s)	838
PscI	ACATGT	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	166, 347, 377
PspPI	GGNCC	2 cut(s)	82, 535
PvuI	CGATCG	1 cut(s)	838
RsaI	GTAC	4 cut(s)	293, 340, 413, 454
RsaNI	GTAC	4 cut(s)	292, 339, 412, 453
RseI	CAYNNNNRTG	2 cut(s)	384, 423
SaqAI	TTAA	4 cut(s)	87, 587, 896, 997
SatI	GCNGC	2 cut(s)	111, 477
Sau96I	GGNCC	2 cut(s)	82, 535
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	402, 861
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	384, 423
SmlI	CTYRAG	3 cut(s)	407, 498, 586
SmoI	CTYRAG	3 cut(s)	407, 498, 586
Sse9I	AATT	9 cut(s)	45, 77, 176, 211, 228, 606, 625, 893, 994
SsiI	CCGC	5 cut(s)	111, 134, 423, 477, 774
StyD4I	CCNGG	1 cut(s)	735
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	675
TaiI	ACGT	3 cut(s)	145, 252, 475
TaqII	GACCGA	3 cut(s)	676, 741, 806
TasI	AATT	9 cut(s)	45, 77, 176, 211, 228, 606, 625, 893, 994
TatI	WGTACW	2 cut(s)	291, 411
TauI	GCSGC	2 cut(s)	113, 479
TfiI	GAWTC	3 cut(s)	172, 328, 403
Tru1I	TTAA	4 cut(s)	87, 587, 896, 997
Tru9I	TTAA	4 cut(s)	87, 587, 896, 997
TspDTI	ATGAA	5 cut(s)	744, 809, 821, 873, 975
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.