Rroxscaffold_4G00304370

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Reverse (-)
25055739 .. 25056191
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304370.1

Sequence Viewer

Length: 363 bp
ATGATGTTTTCCTCAGTTTTAGGGGAGAAGACACAAGCAGGAGCTTTGTCTGCCATCTATACAAAGCTCTCCAACAGAAAGCAATCACCACCTTCATGGATTCTCAAGAGCTTAGAAAAGGGAACGACTTGTCGGAGCTATATATTTAAAGCTATTAACCACTCAAGGCTATCTCTTGTAGTTTTCTCAGAAAATTATGCTTCTTCCACATGGTGCTTGAAAGAACTGGTTCATATCCTGAAATCTTTTGCCAAACATGAAAACCATTCTAAAGCCGCCGACGAGGAAGAGGTGAAGCACTGGAAGTCTGCATTAGTTAGAGCCACCATGTTATCTGGATGGGATTCCAGAAATTACGAGTAA

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

9.45

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 82 9.4e-15 TIR domain
TIR_2 PF13676 17 - 84 1.3e-06 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 213
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 5 cut(s) 44, 67, 111, 138, 152
AluI AGCT 5 cut(s) 44, 67, 111, 138, 152
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 78, 304
BbsI GAAGAC 1 cut(s) 35
BccI CCATC 2 cut(s) 62, 333
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 89, 148
Bse1I ACTGG 2 cut(s) 231, 305
BseGI GGATG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 27, 201
BseNI ACTGG 2 cut(s) 231, 305
BspACI CCGC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 26, 200
BsrI ACTGG 2 cut(s) 231, 305
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 13, 112, 187
BstF5I GGATG 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 298
CviAII CATG 4 cut(s) 96, 210, 257, 328
CviJI RGCY 8 cut(s) 44, 67, 111, 138, 152, 169, 275, 323
CviKI_1 RGCY 8 cut(s) 44, 67, 111, 138, 152, 169, 275, 323
DdeI CTNAG 3 cut(s) 13, 112, 187
DraI TTTAAA 1 cut(s) 148
DraIII CACNNNGTG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
FaeI CATG 4 cut(s) 99, 213, 260, 331
FaiI YATR 9 cut(s) 60, 97, 141, 143, 198, 211, 234, 258, 329
FatI CATG 4 cut(s) 95, 209, 256, 327
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
Hin1II CATG 4 cut(s) 99, 213, 260, 331
HinfI GANTC 2 cut(s) 100, 344
HphI GGTGA 2 cut(s) 78, 304
Hpy188I TCNGA 2 cut(s) 135, 190
Hpy188III TCNNGA 4 cut(s) 106, 238, 336, 348
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 13, 112, 187
Hsp92II CATG 4 cut(s) 99, 213, 260, 331
LmnI GCTCC 2 cut(s) 41, 135
LpnPI CCDG 5 cut(s) 24, 212, 251, 286, 321
MboII GAAGA 3 cut(s) 40, 195, 299
MluCI AATT 2 cut(s) 193, 352
MmeI TCCRAC 2 cut(s) 96, 113
MnlI CCTC 3 cut(s) 22, 277, 283
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 147, 156
MslI CAYNNNNRTG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 4 cut(s) 99, 213, 260, 331
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 100, 344
PkrI GCNGC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 2 cut(s) 147, 156
SatI GCNGC 1 cut(s) 276
SetI ASST 7 cut(s) 46, 69, 94, 113, 140, 154, 294
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 104, 163
SmoI CTYRAG 2 cut(s) 104, 163
Sse9I AATT 2 cut(s) 193, 352
SsiI CCGC 1 cut(s) 276
TasI AATT 2 cut(s) 193, 352
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 2 cut(s) 100, 344
Tru1I TTAA 2 cut(s) 147, 156
Tru9I TTAA 2 cut(s) 147, 156
TscAI CASTG 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 84, 221, 273
TspRI CASTG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.