Rroxscaffold_4G00308060

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Reverse (-)
29559610 .. 29560784
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308060.1

Sequence Viewer

Length: 309 bp
ATGGAGAGAGGAGAAGATATCAAGCAGGAACTGGAGAAAGCCATCCAACAGTCAAAATGTTCTGTAATTGTTGTATCAAAAGATTACACATCTTCGAAATGGTGCCTTGAAGAGCTTTCCATGATCCTTGAACGCAAGAGGACCTCTGATCATGTTGTCTTGCCAGTCTTCTACGACATTGTGATTCGATCAAAGGAGATGTGGATCTCCAGCCGGGAACTTCAATGTAGCTCACCATCATCTGCTGTTGATGCTTCGGTTCGGAGACGATCCAAGCGAGGAGTGGTTCAGCTGGTCGGAAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.69

Weight (kDa)

9.15

Isoelectric Point (pI)

74.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 61 7.1e-19 TIR domain
TIR_2 PF13676 2 - 61 2.7e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AclWI GGATC 3 cut(s) 118, 212, 264
AgsI TTSAA 3 cut(s) 110, 131, 224
AluBI AGCT 4 cut(s) 115, 231, 292, 305
AluI AGCT 4 cut(s) 115, 231, 292, 305
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 3 cut(s) 118, 212, 264
AlwNI CAGNNNCTG 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 160
BccI CCATC 2 cut(s) 50, 244
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 53, 193
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 36, 164
Bse8I GATNNNNATC 1 cut(s) 203
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 203
BseNI ACTGG 2 cut(s) 36, 164
BseRI GAGGAG 2 cut(s) 24, 294
BshNI GGYRCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 259
BsmBI CGTCTC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 95
Bsp143I GATC 5 cut(s) 123, 148, 188, 204, 269
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 3 cut(s) 118, 212, 264
BspQI GCTCTTC 2 cut(s) 105, 295
BspT104I TTCGAA 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 36, 164
BssMI GATC 5 cut(s) 123, 148, 188, 204, 269
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 105, 295
BstBI TTCGAA 1 cut(s) 95
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 5 cut(s) 126, 151, 191, 207, 272
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 5 cut(s) 123, 148, 188, 204, 269
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BtsCI GGATG 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 2 cut(s) 121, 152
CviJI RGCY 6 cut(s) 41, 115, 213, 231, 292, 305
CviKI_1 RGCY 6 cut(s) 41, 115, 213, 231, 292, 305
DpnI GATC 5 cut(s) 125, 150, 190, 206, 271
DpnII GATC 5 cut(s) 123, 148, 188, 204, 269
Eam1104I CTCTTC 2 cut(s) 105, 295
EarI CTCTTC 2 cut(s) 105, 295
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 141
EcoRV GATATC 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 2 cut(s) 124, 155
FaiI YATR 2 cut(s) 122, 153
FatI CATG 2 cut(s) 120, 151
FbaI TGATCA 1 cut(s) 148
FokI GGATG 1 cut(s) 29
GsuI CTGGAG 2 cut(s) 53, 193
HapII CCGG 1 cut(s) 214
Hin1II CATG 2 cut(s) 124, 155
HinfI GANTC 1 cut(s) 184
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 225
Hpy188I TCNGA 3 cut(s) 148, 264, 299
HpyCH4III ACNGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 2 cut(s) 124, 155
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 5 cut(s) 123, 148, 188, 204, 269
LguI GCTCTTC 2 cut(s) 105, 295
LpnPI CCDG 6 cut(s) 11, 17, 177, 223, 227, 278
LweI GCATC 1 cut(s) 241
MalI GATC 5 cut(s) 125, 150, 190, 206, 271
MboI GATC 5 cut(s) 123, 148, 188, 204, 269
MboII GAAGA 4 cut(s) 26, 84, 122, 160
MflI RGATCY 1 cut(s) 204
MluCI AATT 1 cut(s) 66
MmeI TCCRAC 2 cut(s) 70, 277
MnlI CCTC 3 cut(s) 132, 154, 272
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 123, 148, 188, 204, 269
NlaIII CATG 2 cut(s) 124, 155
NlaIV GGNNCC 1 cut(s) 104
NspV TTCGAA 1 cut(s) 95
PciSI GCTCTTC 2 cut(s) 105, 295
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PfeI GAWTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 292
SapI GCTCTTC 2 cut(s) 105, 295
Sau3AI GATC 5 cut(s) 123, 148, 188, 204, 269
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 215
SetI ASST 5 cut(s) 117, 146, 233, 294, 307
SfaNI GCATC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 141
Sse9I AATT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 95, 187
TasI AATT 1 cut(s) 66
TfiI GAWTC 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.