Rroxscaffold_4G00309950

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Forward (+)
31807837 .. 31811574
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309950.1

Sequence Viewer

Length: 264 bp
ATGGCTAACAGCCCAACAAAAATCAAAGACGCGATGTTTCGGGTTCCGGACTTTGAGGGCAATCGTCTTGCTCGTCTTGGTTTTGATCATAAGAATTGGGTTCGAAGACTTGCCATCTATTTGGACGGTGAAGTGGATAATCTAACTCCCACAGGAGTTGAAAACAATGGTCAACTTAGGTCTAATATACTTTGTCCCAAGATACAATATTGGTGGAAGACAACCATTGTTCAGCGAGTTCATGCAGGTTTCTTAGGGTCTTGA

Protein Analysis

87

Amino Acids

9.99

Weight (kDa)

9.65

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 46
AgsI TTSAA 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 112, 224
BccI CCATC 1 cut(s) 122
BclI TGATCA 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 112, 224
Bpu14I TTCGAA 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 103
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 176, 253
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstUI CGCG 1 cut(s) 32
BstV2I GAAGAC 2 cut(s) 112, 224
BstXI CCANNNNNNTGG 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 236
CseI GACGC 1 cut(s) 38
CspCI CAANNNNNGTGG 4 cut(s) 139, 174, 194, 229
CviAII CATG 1 cut(s) 242
CviJI RGCY 2 cut(s) 5, 12
CviKI_1 RGCY 2 cut(s) 5, 12
DdeI CTNAG 2 cut(s) 176, 253
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 90, 188, 243
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 85
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 47, 261
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 176, 253
Hsp92II CATG 1 cut(s) 245
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 60, 138, 231
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 117, 229
MluCI AATT 1 cut(s) 94
MnlI CCTC 1 cut(s) 49
MroI TCCGGA 1 cut(s) 46
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 32
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 45
NspV TTCGAA 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 85
SetI ASST 2 cut(s) 182, 250
SfuI TTCGAA 1 cut(s) 103
Sse9I AATT 1 cut(s) 94
SspI AATATT 1 cut(s) 209
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.