Rroxscaffold_4G00316360
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Forward (+)
41186854 .. 41189657
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316360.1

Sequence Viewer

Length: 333 bp
ATGGACAATTTGGGTATGAGCTGCAATGAATTCAATGGAAGCATTCTTGCCGATATTGGGAAGCTTCAGAATTTAGGGAGATTGATTCTTAACAACAACAAACTATCAGGAGATGTCCCTTCCTCCCTTGGGAGCTTAAAAGAGTTACTCATTCTTGACTTGCAAGGAAATGATCTTCAAGGCATCATCCCTCTAAAGTATGGAATGGGAAGTGAAGTGTCAACATATGGGGATGTGTATAGCTTCAGTATCCTCTTGTCAGAGATTTTCACAGGAAAGAGACCCACTGACGACATGTTTAAGGACGGCTTGAACCTTCATAGTTATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

110

Amino Acids

11.99

Weight (kDa)

4.55

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 29, 70
AcuI CTGAAG 2 cut(s) 50, 229
AfiI CCNNNNNNNGG 2 cut(s) 57, 129
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 3 cut(s) 34, 179, 313
AluBI AGCT 4 cut(s) 21, 64, 135, 243
AluI AGCT 4 cut(s) 21, 64, 135, 243
Alw26I GTCTC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 2 cut(s) 29, 70
BbvI GCAGC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 322
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 274
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmsI GCATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 129
Bse3DI GCAATG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 186, 238
BseLI CCNNNNNNNGG 2 cut(s) 57, 129
BseMI GCAATG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 57, 129
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 186, 238
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 8
BsuI GTATCC 1 cut(s) 260
BtsCI GGATG 2 cut(s) 186, 238
BtsIMutI CAGTG 1 cut(s) 285
CviAII CATG 1 cut(s) 295
CviJI RGCY 5 cut(s) 21, 64, 135, 243, 309
CviKI_1 RGCY 5 cut(s) 21, 64, 135, 243, 309
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 50, 229
EcoRI GAATTC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 298
FaiI YATR 7 cut(s) 17, 201, 226, 228, 240, 296, 321
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 294
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 173, 245
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 69, 262
Hpy188III TCNNGA 2 cut(s) 108, 155
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 129, 326
HpyCH4V TGCA 2 cut(s) 24, 163
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 93, 258
Lsp1109I GCAGC 1 cut(s) 8
LweI GCATC 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 167
MluCI AATT 3 cut(s) 7, 29, 70
MnlI CCTC 3 cut(s) 133, 201, 263
MseI TTAA 3 cut(s) 90, 137, 300
Mva1269I GAATGC 1 cut(s) 42
NdeI CATATG 1 cut(s) 226
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 298
NspI RCATGY 1 cut(s) 298
PciI ACATGT 1 cut(s) 294
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 23
PscI ACATGT 1 cut(s) 294
SaqAI TTAA 3 cut(s) 90, 137, 300
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 172
SetI ASST 5 cut(s) 23, 66, 137, 245, 318
SfaNI GCATC 1 cut(s) 192
Sse9I AATT 3 cut(s) 7, 29, 70
StyI CCWWGG 1 cut(s) 127
TasI AATT 3 cut(s) 7, 29, 70
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 90, 137, 300
Tru9I TTAA 3 cut(s) 90, 137, 300
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 42, 308
TspRI CASTG 1 cut(s) 292
XapI RAATTY 2 cut(s) 29, 70
XceI RCATGY 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.