Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48014597 .. 48015570

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGAACTTGCTCCTCATATCCGTGACTCGCGGACTTGCTATTTTGAGGCCACTTACAAACAATAGTCTTAAACTAAAGTTCAAGACTAAGGGAAGAGCAATTATTGGTGAAATAGGCTTCAAAGACAGAGAGTCCGCCGAGATGATCGATCCAGGCATTAAAAAGGCATCTTCCTCCAAGGCTCTCTCAAATTTTGCTGATATTATCTCCCTCTCGTACACAGTAAACCATCGCTTAACTTCGTGTGGCAACATTTTTCAGTCGAAAATGAAGGCAAGGAGGAAATGGCATAGAAATGATCAAGAAATGAAGAAACGAAGTTTTCTTAATCCTACCAAGAAAAGGAATCCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.53

Weight (kDa)

10.93

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	2 cut(s)	33, 138
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	193
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	85, 124
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	154
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	122
BccI	CCATC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	156
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	52
BshVI	ATCGAT	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	345
BsnI	GGCC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	147, 151, 301
BspACI	CCGC	2 cut(s)	33, 138
BspANI	GGCC	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	147, 151, 301
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	3 cut(s)	150, 154, 304
BstMBI	GATC	3 cut(s)	147, 151, 301
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	52
BsuTUI	ATCGAT	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	3 cut(s)	52, 120, 185
CviKI_1	RGCY	3 cut(s)	52, 120, 185
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	149, 153, 303
DpnII	GATC	3 cut(s)	147, 151, 301
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	2 cut(s)	20, 294
FbaI	TGATCA	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	52
HinfI	GANTC	3 cut(s)	28, 134, 349
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	222, 229
Hpy188III	TCNNGA	2 cut(s)	85, 305
Hpy8I	GTNNAC	2 cut(s)	222, 229
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	147, 151, 301
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	2 cut(s)	141, 168
LweI	GCATC	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	149, 153, 303
MboI	GATC	3 cut(s)	147, 151, 301
MboII	GAAGA	4 cut(s)	16, 108, 165, 325
MluCI	AATT	2 cut(s)	102, 193
MlyI	GAGTC	2 cut(s)	22, 143
MnlI	CCTC	5 cut(s)	26, 42, 187, 224, 276
MseI	TTAA	4 cut(s)	72, 162, 239, 330
MslI	CAYNNNNRTG	2 cut(s)	23, 297
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	33
NdeII	GATC	3 cut(s)	147, 151, 301
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	22, 142
PpsI	GAGTC	2 cut(s)	22, 142
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	23, 297
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	4 cut(s)	72, 162, 239, 330
Sau3AI	GATC	3 cut(s)	147, 151, 301
SchI	GAGTC	2 cut(s)	22, 143
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	23, 297
Sse9I	AATT	2 cut(s)	102, 193
SsiI	CCGC	2 cut(s)	33, 138
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	150, 266
TasI	AATT	2 cut(s)	102, 193
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	4 cut(s)	72, 162, 239, 330
Tru9I	TTAA	4 cut(s)	72, 162, 239, 330
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	17, 287, 326
TspGWI	ACGGA	1 cut(s)	13
XapI	RAATTY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.