Rroxscaffold_4G00322330

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Forward (+)
52538432 .. 52538917
486 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00322330.1

Sequence Viewer

Length: 183 bp
ATGGTTGAATTTAATTCCTTGATGTTGGGGAATAGAAAGGGTTCGGTTGTTGTATTCAATTATCAATTGCTGGAAGCTGCAACAAACAAGTTCAGTGAAAGTAATATTTTGGGTGAGGGTAGTTCGGACACTGTTTACGGGCTAGTTTTGATGGAAAATTCATTGCAGCTGTTAAGAAAGTAA

Protein Analysis

60

Amino Acids

6.66

Weight (kDa)

5.11

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 8, 157
AgsI TTSAA 2 cut(s) 8, 58
AluBI AGCT 2 cut(s) 77, 169
AluI AGCT 2 cut(s) 77, 169
ApeKI GCWGC 2 cut(s) 77, 166
ApoI RAATTY 2 cut(s) 8, 157
Asp700I GAANNNNTTC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 125
BbvI GCAGC 2 cut(s) 64, 178
BccI CCATC 1 cut(s) 145
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 78, 167
BlsI GCNGC 2 cut(s) 79, 168
Bse3DI GCAATG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 64, 178
BsrDI GCAATG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 64, 178
BtsIMutI CAGTG 2 cut(s) 100, 129
CviJI RGCY 3 cut(s) 77, 142, 169
CviKI_1 RGCY 3 cut(s) 77, 142, 169
Fnu4HI GCNGC 2 cut(s) 78, 167
Fsp4HI GCNGC 2 cut(s) 78, 167
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 78, 167
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 80, 166
LpnPI CCDG 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 64, 178
MaeI CTAG 1 cut(s) 143
MfeI CAATTG 1 cut(s) 65
MluCI AATT 5 cut(s) 8, 13, 58, 65, 157
MnlI CCTC 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 2 cut(s) 12, 173
MspA1I CMGCKG 1 cut(s) 169
MunI CAATTG 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 79, 168
PvuII CAGCTG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 12, 173
SatI GCNGC 2 cut(s) 78, 167
SetI ASST 2 cut(s) 79, 171
SgeI CNNG 5 cut(s) 31, 83, 100, 151, 155
Sse9I AATT 5 cut(s) 8, 13, 58, 65, 157
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 133
TasI AATT 5 cut(s) 8, 13, 58, 65, 157
Tru1I TTAA 2 cut(s) 12, 173
Tru9I TTAA 2 cut(s) 12, 173
TscAI CASTG 2 cut(s) 100, 136
TseI GCWGC 2 cut(s) 77, 166
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 2 cut(s) 100, 136
XapI RAATTY 2 cut(s) 8, 157
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.