Rroxscaffold_4G00325890
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
N/A
Physical Location & Seq
Reverse (-)
57910771 .. 57913273
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325890.1

Sequence Viewer

Length: 366 bp
ATGATGAATATCTATCGTGGCGGCGGCGGCGGCGGGCGTAGTACCAATATTCAGACGAACGAAGAGGTTGCGATTAAGCTGGTGAGTGTTGCAATTGAGCTGTGGATGCTGACTTTTGTTTTGATGCTCATTTGCTTTCAGTTTATTAGTAATGCCATAGCTGGGATACCAAATGTGCGATGGTTTGGAGTTGAAGGAGATTATAACATTTTGGTAATGGATTTGCTGGGGCGGGACATGTATGTTATGGTGAGCTACTTGATGGGCATTCTGGAAGTTTACTTACTTAGTAATGATTTGGCCATTTCTTCAACTTCTAATGAAGGTGCTGCAGTGTTGACATGGGTTGCTTTGGCTGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.27

Weight (kDa)

4.21

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AciI CCGC 6 cut(s) 21, 24, 27, 30, 33, 232
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 194, 312
AluBI AGCT 4 cut(s) 79, 100, 161, 255
AluI AGCT 4 cut(s) 79, 100, 161, 255
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AsuHPI GGTGA 2 cut(s) 94, 262
BalI TGGCCA 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 174, 256
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciVI GTATCC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 5 cut(s) 22, 25, 28, 31, 330
BlsI GCNGC 5 cut(s) 23, 26, 29, 32, 331
BmsI GCATC 2 cut(s) 96, 114
BsaBI GATNNNNATC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 8
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 2 cut(s) 161, 226
BshFI GGCC 1 cut(s) 302
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 6 cut(s) 21, 24, 27, 30, 33, 232
BspANI GGCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 334
BssMI GATC 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 3 cut(s) 27, 30, 106
BstNSI RCATGY 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 316
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 42
CviAII CATG 2 cut(s) 238, 342
CviJI RGCY 6 cut(s) 79, 100, 161, 255, 302, 356
CviKI_1 RGCY 6 cut(s) 79, 100, 161, 255, 302, 356
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
FaeI CATG 2 cut(s) 241, 345
FaiI YATR 6 cut(s) 158, 204, 239, 243, 248, 343
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 237, 341
FauI CCCGC 2 cut(s) 26, 225
Fnu4HI GCNGC 5 cut(s) 22, 25, 28, 31, 330
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 5 cut(s) 22, 25, 28, 31, 330
GluI GCNGC 5 cut(s) 22, 25, 28, 31, 330
GsaI CCCAGC 2 cut(s) 165, 230
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 2 cut(s) 241, 345
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HphI GGTGA 2 cut(s) 94, 262
Hpy166II GTNNAC 2 cut(s) 280, 339
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 280, 339
HpyAV CCTTC 2 cut(s) 188, 317
HpyCH4V TGCA 2 cut(s) 92, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 30, 106
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 2 cut(s) 241, 345
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 65, 147, 212, 257
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 96, 114
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 2 cut(s) 74, 300
MfeI CAATTG 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 302
MnlI CCTC 1 cut(s) 58
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 2 cut(s) 75, 364
Msp20I TGGCCA 1 cut(s) 302
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 27, 30, 106
NdeII GATC 1 cut(s) 358
NlaIII CATG 2 cut(s) 241, 345
NspI RCATGY 1 cut(s) 241
PciI ACATGT 1 cut(s) 237
PctI GAATGC 1 cut(s) 267
PkrI GCNGC 5 cut(s) 23, 26, 29, 32, 331
PscI ACATGT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 204
PspFI CCCAGC 2 cut(s) 161, 226
PstI CTGCAG 1 cut(s) 334
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 75, 364
SatI GCNGC 5 cut(s) 22, 25, 28, 31, 330
Sau3AI GATC 1 cut(s) 358
SetI ASST 6 cut(s) 69, 81, 102, 163, 257, 328
SfaNI GCATC 2 cut(s) 96, 114
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 1 cut(s) 93
SsiI CCGC 6 cut(s) 21, 24, 27, 30, 33, 232
SspI AATATT 1 cut(s) 49
TasI AATT 1 cut(s) 93
TauI GCSGC 4 cut(s) 24, 27, 30, 33
Tru1I TTAA 2 cut(s) 75, 364
Tru9I TTAA 2 cut(s) 75, 364
TscAI CASTG 1 cut(s) 339
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 20, 336
TspRI CASTG 1 cut(s) 339
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.