Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58177196 .. 58179793

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTGGGCCGGTGCCCTATTTTGGCTTTGTGCGGATGCACACCCCGCCTATTGAAATCTCCAAGGGTCCTTCGGAGGACCGGAATGGGCCTACGGACGGGGAGGCCATCGAGGGCGAGGGCGTTGTCCGAAATGGAATCTCGCGGTGAGGGCCCGATCCGGCATTGTGGTTTGGGAGTCCGAGTAGCGAGGTCTCCGGACGTTAGTATAGATGAAGCAGCGGGCACCGATGCGGGTTCCCCAAGTGGAGGCACGTTTGGGTTGCTAGATTTGATGAAGGCCGCGATAGAGATTTTGGGAAATGGAGGATTGGGGTTAGCTTACAAGGATGTGATGGGTATTGGGTTGTCTGTGGTGGTGAAGAGGATGAAGGAGATGAATAGATTGGGGAGAGATGGAATTGATGCTGAAATGAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

14.79

Weight (kDa)

10.14

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	12, 224
AccII	CGCG	2 cut(s)	144, 284
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	6 cut(s)	33, 46, 144, 221, 233, 282
AclWI	GGATC	1 cut(s)	151
AfiI	CCNNNNNNNGG	3 cut(s)	22, 97, 248
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	5 cut(s)	7, 88, 104, 151, 279
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	6 cut(s)	7, 67, 78, 88, 151, 152
AsuHPI	GGTGA	2 cut(s)	158, 370
AvaII	GGWCC	2 cut(s)	67, 78
BaeGI	GKGCMC	3 cut(s)	17, 155, 227
BanI	GGYRCC	2 cut(s)	12, 224
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	3 cut(s)	115, 328, 389
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	219, 282
BlsI	GCNGC	2 cut(s)	220, 283
Bme18I	GGWCC	2 cut(s)	67, 78
BmgT120I	GGNCC	6 cut(s)	7, 67, 78, 88, 151, 152
BmiI	GGNNCC	5 cut(s)	14, 68, 153, 226, 238
BmsI	GCATC	3 cut(s)	26, 220, 394
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	2 cut(s)	80, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 97, 248
Bse118I	RCCGGY	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	3 cut(s)	41, 334, 372
BseLI	CCNNNNNNNGG	3 cut(s)	22, 97, 248
BseSI	GKGCMC	3 cut(s)	17, 155, 227
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	144, 284
BshFI	GGCC	5 cut(s)	9, 90, 106, 153, 281
BshNI	GGYRCC	2 cut(s)	12, 224
BsiSI	CCGG	4 cut(s)	10, 81, 160, 197
BslI	CCNNNNNNNGG	3 cut(s)	22, 97, 248
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	5 cut(s)	9, 90, 106, 153, 281
Bso31I	GGTCTC	1 cut(s)	198
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	3 cut(s)	17, 155, 227
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	6 cut(s)	33, 46, 144, 221, 233, 282
BspANI	GGCC	5 cut(s)	9, 90, 106, 153, 281
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	144, 284
BspLI	GGNNCC	5 cut(s)	14, 68, 153, 226, 238
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	2 cut(s)	12, 224
BspTNI	GGTCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	356, 410
BstC8I	GCNNGC	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	41, 334, 372
BstFNI	CGCG	2 cut(s)	144, 284
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 150
BstSLI	GKGCMC	3 cut(s)	17, 155, 227
BstUI	CGCG	2 cut(s)	144, 284
BstV1I	GCAGC	1 cut(s)	230
BsuRI	GGCC	5 cut(s)	9, 90, 106, 153, 281
BtsCI	GGATG	3 cut(s)	41, 334, 372
Cac8I	GCNNGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	6 cut(s)	7, 67, 78, 88, 151, 152
CviJI	RGCY	7 cut(s)	9, 26, 90, 106, 153, 281, 320
CviKI_1	RGCY	7 cut(s)	9, 26, 90, 106, 153, 281, 320
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	356, 410
EarI	CTCTTC	2 cut(s)	356, 410
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	67, 78
EcoO109I	RGGNCCY	2 cut(s)	67, 151
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	62
FaiI	YATR	1 cut(s)	209
FauI	CCCGC	3 cut(s)	53, 214, 226
Fnu4HI	GCNGC	2 cut(s)	219, 282
FokI	GGATG	3 cut(s)	48, 341, 379
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	219, 282
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	219, 282
HaeIII	GGCC	5 cut(s)	9, 90, 106, 153, 281
HapII	CCGG	4 cut(s)	10, 81, 160, 197
HinfI	GANTC	2 cut(s)	137, 177
HpaII	CCGG	4 cut(s)	10, 81, 160, 197
HphI	GGTGA	2 cut(s)	158, 370
Hpy188I	TCNGA	3 cut(s)	75, 130, 182
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	80, 271, 364
HpyCH4IV	ACGT	2 cut(s)	201, 254
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 150
HpySE526I	ACGT	2 cut(s)	201, 254
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	4 cut(s)	23, 94, 173, 210
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	3 cut(s)	26, 220, 394
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	201, 254
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	17, 155, 227
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	186
MroI	TCCGGA	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	4 cut(s)	10, 81, 160, 197
MvnI	CGCG	2 cut(s)	144, 284
MwoI	GCNNNNNNNGC	2 cut(s)	45, 150
NdeII	GATC	1 cut(s)	156
NlaIV	GGNNCC	5 cut(s)	14, 68, 153, 226, 238
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	220, 283
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	5 cut(s)	14, 68, 153, 226, 238
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	6 cut(s)	7, 67, 78, 88, 151, 152
PspPPI	RGGWCCY	1 cut(s)	67
SatI	GCNGC	2 cut(s)	219, 282
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	6 cut(s)	7, 67, 78, 88, 151, 152
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	3 cut(s)	17, 155, 227
SetI	ASST	5 cut(s)	194, 204, 257, 322, 422
SfaNI	GCATC	3 cut(s)	26, 220, 394
SinI	GGWCC	2 cut(s)	67, 78
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	6 cut(s)	33, 46, 144, 221, 233, 282
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	62
TaiI	ACGT	2 cut(s)	204, 257
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	399
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	228, 290, 383, 392
TspGWI	ACGGA	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	67, 78
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.